Mir-505-v2

MirGeneDB ID

Ocu-Mir-505-v2

Family name

MIR-505 (all species)

Seed

UCAACAC

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-505

Paralogues

Ocu-Mir-505-v1

Orthologues

Bta-Mir-505-v2 Cfa-Mir-505-v2 Cja-Mir-505 Cpo-Mir-505-v2 Dno-Mir-505-v2 Eca-Mir-505-v2 Ete-Mir-505-v2 Hsa-Mir-505-v2 Laf-Mir-505-v2 Mml-Mir-505-v2 Mmr-Mir-505-v2 Mmu-Mir-505-v2 Pab-Mir-505-v2 Rno-Mir-505-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(oryCun2_add)

chrUn0002: 3182537-3182595 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-505-v2)

Mir-505-v1 chrUn0002: 3182537-3182595 [-] UCSC Ensembl
Mir-505-v2 chrUn0002: 3182537-3182595 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGCCGGUGGUAAAUUGAUGCACCCAGUGGGGGAGCCAGGAAGUAUUGAUGUUUCUGCCAGUUUAGCGUCAACACUUGCUGGUUUCCUCUUUGGAGCAUCACCAAAUUCGUGGAUUAUC

Get precursor sequence

Structure

        10           20        30        40        50         
CUGCCGGUGGUAAAUUG---|   AC    U           G    A       UUCUGC 
                    AUGC  CCAG GGGGGAGCCAG AAGU UUGAUGU      \
                    UACG  GGUU CUCCUUUGGUC UUCA AACUGCG      C
CUAUUAGGUGCUUAAACCAC^   A-    U           G    C       AUUUGA 
       110       100         90        80        70        60