| MirGeneDB ID | Cja-Mir-505 |
|---|---|
| Family name | MIR-505 (all species) |
| Seed | GGAGCCA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-505-v1 Bta-Mir-505-v2 Cfa-Mir-505-v1 Cfa-Mir-505-v2 Cpo-Mir-505-v1 Cpo-Mir-505-v2 Dno-Mir-505-v1 Dno-Mir-505-v2 Eca-Mir-505-v1 Eca-Mir-505-v2 Ete-Mir-505-v1 Ete-Mir-505-v2 Hsa-Mir-505-v1 Hsa-Mir-505-v2 Laf-Mir-505-v1 Laf-Mir-505-v2 Mml-Mir-505-v1 Mml-Mir-505-v2 Mmr-Mir-505-v1 Mmr-Mir-505-v2 Mmu-Mir-505-v1 Mmu-Mir-505-v2 Ocu-Mir-505-v1 Ocu-Mir-505-v2 Pab-Mir-505-v1 Pab-Mir-505-v2 Rno-Mir-505-v1 Rno-Mir-505-v2 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 132157190-132157248 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CUGCCGGUGGUAAAUUGAUGCACCCAGUGGGGGAGCCAGGAAGUAUUGAUGUUUCUGCCAGUUUAGCGUCAACACUUGCUGGUUUCCUCUCUGGAGCAUCACCAAGUUCGUGGAUUUUCGet precursor sequence |
| Structure | 10 20 30 40 50 CUGCCGGUGGUAAAUUG---| AC U G A UCUGC AUGC CCAG GGGGGAGCCAG AAGU UUGAUGUU \ UACG GGUC CUCCUUUGGUC UUCA AACUGCGA C CUUUUAGGUGCUUGAACCAC^ A- U G C UUUGA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Cja-Mir-505_5p |
| mirBase accession | None |
| Sequence |
0- GGGAGCCAGGAAGUAUUGAUGUU -23
Get sequence
|
| Star sequence | Cja-Mir-505_3p* |
| mirBase accession | None |
| Sequence |
36- CGUCAACACUUGCUGGUUUCCUC -59
Get sequence
|
