MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-505

Family name MIR-505 (all species)
Seed GGAGCCA
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-505-v1  Bta-Mir-505-v2  Cfa-Mir-505-v1  Cfa-Mir-505-v2  Cpo-Mir-505-v1  Cpo-Mir-505-v2  Dno-Mir-505-v1  Dno-Mir-505-v2  Eca-Mir-505-v1  Eca-Mir-505-v2  Ete-Mir-505-v1  Ete-Mir-505-v2  Hsa-Mir-505-v1  Hsa-Mir-505-v2  Laf-Mir-505-v1  Laf-Mir-505-v2  Mml-Mir-505-v1  Mml-Mir-505-v2  Mmr-Mir-505-v1  Mmr-Mir-505-v2  Mmu-Mir-505-v1  Mmu-Mir-505-v2  Ocu-Mir-505-v1  Ocu-Mir-505-v2  Pab-Mir-505-v1  Pab-Mir-505-v2  Rno-Mir-505-v1  Rno-Mir-505-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 132157190-132157248 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCCGGUGGUAAAUUGAUGCACCCAGUGGGGGAGCCAGGAAGUAUUGAUGUUUCUGCCAGUUUAGCGUCAACACUUGCUGGUUUCCUCUCUGGAGCAUCACCAAGUUCGUGGAUUUUC
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Structure
        10           20        30        40        50         
CUGCCGGUGGUAAAUUG---|   AC    U           G    A        UCUGC 
                    AUGC  CCAG GGGGGAGCCAG AAGU UUGAUGUU     \
                    UACG  GGUC CUCCUUUGGUC UUCA AACUGCGA     C
CUUUUAGGUGCUUGAACCAC^   A-    U           G    C        UUUGA 
       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
To
Mature sequence

Cja-Mir-505_5p
mirBase accessionNone
Sequence 
0- GGGAGCCAGGAAGUAUUGAUGUU -23
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Star sequence

Cja-Mir-505_3p*
mirBase accessionNone
Sequence 
36- CGUCAACACUUGCUGGUUUCCUC -59
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