MirGeneDB 3.0
MirGeneDB ID

Mmu-Mir-505-v1

Family name MIR-505 (all species)
Seed GGAGCCA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-505
Paralogues Mmu-Mir-505-v2 
Orthologues Bta-Mir-505-v1  Cfa-Mir-505-v1  Cja-Mir-505  Cpo-Mir-505-v1  Dno-Mir-505-v1  Eca-Mir-505-v1  Ete-Mir-505-v1  Hsa-Mir-505-v1  Laf-Mir-505-v1  Mml-Mir-505-v1  Mmr-Mir-505-v1  Ocu-Mir-505-v1  Pab-Mir-505-v1  Rno-Mir-505-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(mm10)		 chrX: 60394415-60394473 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-505-v1)		 Mir-505-v1 chrX: 60394415-60394473 [-] UCSC Ensembl
Mir-505-v2 chrX: 60394415-60394473 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUCCGGUAGUAAAUUGAUGCACCCAGUGGGGGAGCCAGGAAGUAUUGAUGUUUCUGCCAGGUUAGCGUCAACACUUGCUGGUUUUCUCUCUGGAGUAUCACCAAGUUCGUGGAUUCUG
Get precursor sequence
Structure
        10           20        30        40        50         
CCUCCGGUAGUAAAUUG---|   AC    U   GG      G    A        UCUGC 
                    AUGC  CCAG GGG  AGCCAG AAGU UUGAUGUU     \
                    UAUG  GGUC CUC  UUGGUC UUCA AACUGCGA     C
GUCUUAGGUGCUUGAACCAC^   A-    U   UU      G    C        UUGGA 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Mature sequence

Mmu-Mir-505-v1_5p
mirBase accessionMIMAT0017259
Sequence 
0- GGGAGCCAGGAAGUAUUGAUGUU -23
Get sequence
Proposed targets TargetScanVert: mmu-miR-505-5p
miRDB: MIMAT0017259
Star sequence

Mmu-Mir-505-v1_3p*
mirBase accessionMIMAT0003513
Sequence 
36- CGUCAACACUUGCUGGUUUUCUC -59
Get sequence
Proposed targets microrna.org: MIMAT0003513
TargetScanVert: mmu-miR-505-3p.1
miRDB: MIMAT0003513