MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-505-v1

Family name MIR-505 (all species)
Seed GUCAACA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-505
Paralogues Rno-Mir-505-v2 
Orthologues Bta-Mir-505-v1  Cfa-Mir-505-v1  Cja-Mir-505  Cpo-Mir-505-v1  Dno-Mir-505-v1  Eca-Mir-505-v1  Ete-Mir-505-v1  Hsa-Mir-505-v1  Laf-Mir-505-v1  Mml-Mir-505-v1  Mmr-Mir-505-v1  Mmu-Mir-505-v1  Ocu-Mir-505-v1  Pab-Mir-505-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chrX: 143517017-143517075 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-505-v1)		 Mir-505-v1 chrX: 143517017-143517075 [-] UCSC Ensembl
Mir-505-v2 chrX: 143517017-143517075 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUCCAGUAGUAAAUUGAUGCACCCAGUGGGGGAGCCAGGAAGUAUUGAUGUUUCUGCCAGGUUAGCGUCAACACUUGCUGGUUUCCUCUCUGGAGUAUCACCAAGUUCGUGGAUUCUA
Get precursor sequence
Structure
        10           20        30        40        50         
CCUCCAGUAGUAAAUUG---|   AC    U           G    A        UCUGC 
                    AUGC  CCAG GGGGGAGCCAG AAGU UUGAUGUU     \
                    UAUG  GGUC CUCCUUUGGUC UUCA AACUGCGA     C
AUCUUAGGUGCUUGAACCAC^   A-    U           G    C        UUGGA 
       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
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Star sequence

Rno-Mir-505-v1_5p*
mirBase accessionMIMAT0017226
Sequence 
0- GGGAGCCAGGAAGUAUUGAUGUU -23
Get sequence
Proposed targets TargetScanVert: rno-miR-505-5p
miRDB: MIMAT0017226
Mature sequence

Rno-Mir-505-v1_3p
mirBase accessionMIMAT0003380
Sequence 
36- CGUCAACACUUGCUGGUUUCCUC -59
Get sequence
Proposed targets microrna.org: MIMAT0003380
TargetScanVert: rno-miR-505-3p
miRDB: MIMAT0003380