MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-505-v1

Family name MIR-505 (all species)
Seed GGAGCCA
Species Cow (Bos taurus)
MiRBase ID bta-mir-505
Paralogues Bta-Mir-505-v2 
Orthologues Cfa-Mir-505-v1  Cja-Mir-505  Cpo-Mir-505-v1  Dno-Mir-505-v1  Eca-Mir-505-v1  Ete-Mir-505-v1  Hsa-Mir-505-v1  Laf-Mir-505-v1  Mml-Mir-505-v1  Mmr-Mir-505-v1  Mmu-Mir-505-v1  Ocu-Mir-505-v1  Pab-Mir-505-v1  Rno-Mir-505-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NW_020192292.1: 5196477-5196535 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-505-v1)		 Mir-505-v1 NW_020192292.1: 5196477-5196535 [+] UCSC Ensembl
Mir-505-v2 NW_020192292.1: 5196477-5196535 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCGGGUGAUAAAUUGAUGCACCCAGUGGGGGAGCCAGGAAGUAUUGAUGUUUCUACCAGUUUAGCGUCAACACUUGCUGGUUUCCUCUCUGGAGCGUCACUGAAUUCGUGGAUUUUC
Get precursor sequence
Structure
        10           20        30        40        50         
CUGCGGGUGAUAAAUUG---|   AC    U           G    A        UCUAC 
                    AUGC  CCAG GGGGGAGCCAG AAGU UUGAUGUU     \
                    UGCG  GGUC CUCCUUUGGUC UUCA AACUGCGA     C
CUUUUAGGUGCUUAAGUCAC^   A-    U           G    C        UUUGA 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-505-v1_5p
mirBase accessionNone
Sequence 
0- GGGAGCCAGGAAGUAUUGAUGUU -23
Get sequence
Co-mature sequence

Bta-Mir-505-v1_3p
mirBase accessionMIMAT0009341
Sequence 
36- CGUCAACACUUGCUGGUUUCCUC -59
Get sequence
Proposed targets TargetScanVert: bta-miR-505