MirGeneDB ID | Dma-Mir-29-P2h |
Family name |
MIR-29 (all species) |
Seed |
CUGAGUC |
Species |
Large common water flea (Daphnia magna) |
MiRBase ID |
|
Paralogues |
Dma-Mir-29-P2g
|
Orthologues |
Aae-Mir-29-P2h
Asu-Mir-29-P2
Bfl-Mir-29-P2
Bge-Mir-29-P2h
Bla-Mir-29-P2
Cbr-Mir-29-P2
Cel-Mir-29-P2
Cgi-Mir-29-P2
Cin-Mir-29-P2
Csc-Mir-29-P2
Cte-Mir-29-P2
Dan-Mir-29-P2h
Dme-Mir-29-P2h
Dmo-Mir-29-P2h
Dpu-Mir-29-P2h
Dsi-Mir-29-P2h
Dya-Mir-29-P2h
Esc-Mir-29-P2
Hme-Mir-29-P2h
Isc-Mir-29-P2
Lgi-Mir-29-P2
Npo-Mir-29-P2
Obi-Mir-29-P2
Ovu-Mir-29-P2
Pfl-Mir-29-P2
Pmi-Mir-29-P2
Sko-Mir-29-P2
Spu-Mir-29-P2
Tca-Mir-29-P2h
Xbo-Mir-29-P2
|
Node of Origin (locus) |
Pancrustacea
|
Node of Origin (family) |
Bilateria
|
Genome context (DMA_ASM399081) |
NC_046175.1: 6286592-6286666 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACAGGCAAGUUAAGCACACAGCCCCCCAGUGCUGAGUCUUGUGGUUGAUGUGCUAGAUAUUUUAGCUUCAACUCUCGGUUGCAUAGCACCACGGGAUUCAGCCGCUGGUGCGCCGUUGAUUUUUUUUUUUUUUUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACAGGCAAGUUAAGCAC-- A CCC -| UGA UAGAUAUUUUAGC
AC GC CCAGU GCUGAGUCUUGUGGU UGUGC \
UG CG GGUCG CGACUUAGGGCACCA AUACG U
UUUUUUUUUUUUUUUUAGU C CGU C^ CG- UUGGCUCUCAACU
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Mature sequence |
Dma-Mir-29-P2h_5p |
mirBase accession | None |
Sequence |
0- GCUGAGUCUUGUGGUUGAUGUGC -23
Get sequence
|
Star sequence |
Dma-Mir-29-P2h_3p* |
mirBase accession | None |
Sequence |
52- AUAGCACCACGGGAUUCAGCCGC -75
Get sequence
|