Mir-128-P2b

MirGeneDB ID

Dre-Mir-128-P2b

Family name

MIR-128 (all species)

Seed

CACAGUG

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-128-3

Paralogues

Dre-Mir-128-P1 Dre-Mir-128-P2a

Orthologues

Aca-Mir-128-P2 Ami-Mir-128-P2 Bta-Mir-128-P2 Cfa-Mir-128-P2 Cja-Mir-128-P2 Cli-Mir-128-P2 Cmi-Mir-128-P2 Cpi-Mir-128-P2 Cpo-Mir-128-P2 Dno-Mir-128-P2 Ebu-Mir-128 Eca-Mir-128-P2 Ete-Mir-128-P2 Gga-Mir-128-P2 Gja-Mir-128-P2 Gmo-Mir-128-P2b Hsa-Mir-128-P2 Laf-Mir-128-P2 Lch-Mir-128-P2 Loc-Mir-128-P2 Mdo-Mir-128-P2 Mml-Mir-128-P2 Mmr-Mir-128-P2 Mmu-Mir-128-P2 Mun-Mir-128-P2 Neu-Mir-128-P2 Oan-Mir-128-P2 Ocu-Mir-128-P2 Pab-Mir-128-P2 Pbv-Mir-128-P2 Pma-Mir-128-o2 Rno-Mir-128-P2 Sha-Mir-128-P2 Spt-Mir-128-P2 Sto-Mir-128-P2 Tgu-Mir-128-P2 Xtr-Mir-128-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chrUn_KN150366v1: 5637-5693 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUGUGUGUGUGUGUCGGAGCGGCUGAAUGCGGGGCCGUGGCGCUGUCUGAGACGCUCUACUAUUCUCACAGUGAACCGGUCUCUUUUCCAGCCGCUCACACUCGACCAGAAGACCA

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Structure

        10          20        30        40        50         
UGUGUGUGUGUGUGUCG--|        AAUGC       UGG      CU    CGCUC 
                   GAGCGGCUG     GGGGCCG   CGCUGU  GAGA     \
                   CUCGCCGAC     CUCUGGC   GUGACA  CUCU     U
ACCAGAAGACCAGCUCACA^        CUUUU       CAA      --    UAUCA 
     110       100        90        80        70          60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-128-P2b_5p*

mirBase accession

MIMAT0048666

Sequence

0- CGGGGCCGUGGCGCUGUCUGAGA -23

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Mature sequence

Dre-Mir-128-P2b_3p

mirBase accession

MIMAT0001824

Sequence

36- UCACAGUGAACCGGUCUCUUU -57

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