MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-128-o2

Family name MIR-128 (all species)
Seed CACAGUG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-128-2
Paralogues Pma-Mir-128-o1  Pma-Mir-128-o3 
Orthologues Aca-Mir-128-P2  Ami-Mir-128-P2  Bta-Mir-128-P2  Cfa-Mir-128-P2  Cja-Mir-128-P2  Cli-Mir-128-P2  Cmi-Mir-128-P2  Cpi-Mir-128-P2  Cpo-Mir-128-P2  Dno-Mir-128-P2  Dre-Mir-128-P2a  Dre-Mir-128-P2b  Ebu-Mir-128  Eca-Mir-128-P2  Ete-Mir-128-P2  Gga-Mir-128-P2  Gja-Mir-128-P2  Gmo-Mir-128-P2a  Gmo-Mir-128-P2b  Hsa-Mir-128-P2  Laf-Mir-128-P2  Lch-Mir-128-P2  Loc-Mir-128-P2  Mal-Mir-128-P2a  Mdo-Mir-128-P2  Mml-Mir-128-P2  Mmr-Mir-128-P2  Mmu-Mir-128-P2  Mun-Mir-128-P2  Neu-Mir-128-P2  Oan-Mir-128-P2  Ocu-Mir-128-P2  Pab-Mir-128-P2  Pbv-Mir-128-P2  Rno-Mir-128-P2  Sha-Mir-128-P2  Spt-Mir-128-P2  Sto-Mir-128-P2  Tgu-Mir-128-P2  Tni-Mir-128-P2a  Xla-Mir-128-P2c  Xla-Mir-128-P2d  Xtr-Mir-128-P2 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046070.1: 11831279-11831342 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAGAGCCGUGCGGCCGGGGGUGCCUGAGGAGGAGGCCGCAACGCUGCCUGGGAGUGAUGAGCCCUGUCCUCUCACAGUGAACCGGUCUCUUUCCCUGGCAGCCCACAGUGCAGCAGUGCACAG
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Structure
        10          20        30        40        50        60  
GCAGAGCCGUGCGGCCG--|  G    UGA           CAA     CC     GUGAUGA 
                   GGG UGCC   GGAGGAGGCCG   CGCUG  UGGGA       G
                   CCC ACGG   CUUUCUCUGGC   GUGAC  ACUCU       C
GACACGUGACGACGUGACA^  G    UCC           CAA     --     CCUGUCC 
  120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-128-o2_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGAGGCCGCAACGCUGCCUGGGA -24
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Mature sequence

Pma-Mir-128-o2_3p
mirBase accessionMIMAT0019449
Sequence 
42- UCACAGUGAACCGGUCUCUUUC -64
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