MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-128-P2d

Family name MIR-128 (all species)
Seed CACAGUG
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-128-2
Paralogues Xla-Mir-128-P1a  Xla-Mir-128-P1b  Xla-Mir-128-P2c 
Orthologues Aca-Mir-128-P2  Ami-Mir-128-P2  Bta-Mir-128-P2  Cfa-Mir-128-P2  Cja-Mir-128-P2  Cli-Mir-128-P2  Cmi-Mir-128-P2  Cpi-Mir-128-P2  Cpo-Mir-128-P2  Dno-Mir-128-P2  Ebu-Mir-128  Eca-Mir-128-P2  Ete-Mir-128-P2  Gga-Mir-128-P2  Gja-Mir-128-P2  Hsa-Mir-128-P2  Laf-Mir-128-P2  Lch-Mir-128-P2  Loc-Mir-128-P2  Mdo-Mir-128-P2  Mml-Mir-128-P2  Mmr-Mir-128-P2  Mmu-Mir-128-P2  Mun-Mir-128-P2  Neu-Mir-128-P2  Oan-Mir-128-P2  Ocu-Mir-128-P2  Pab-Mir-128-P2  Pbv-Mir-128-P2  Pma-Mir-128-o2  Rno-Mir-128-P2  Sha-Mir-128-P2  Spt-Mir-128-P2  Sto-Mir-128-P2  Tgu-Mir-128-P2  Xtr-Mir-128-P2 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030741.1: 46578438-46578494 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUGAUGCCAAGUGUUUGAGAGGCUGGAUUCGGGCCCGGAGCGCUGUCUGAGAGGGUUUACGUUUCUCACAGUGAACCGGUCUCUUUUUCAGUCUCUUUCUAAUCUUCCUGAUCUUU
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Structure
        10          20        30        40        50         
UCUGAUGCCAAGUGUUU--|          UUC   C    AG      CU    GGGUU 
                   GAGAGGCUGGA   GGG CCGG  CGCUGU  GAGA     \
                   UUCUCUGACUU   CUC GGCC  GUGACA  CUCU     U
UUUCUAGUCCUUCUAAUCU^          UUU   U    AA      --    UUGCA 
     110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Em
Star sequence

Xla-Mir-128-P2d_5p*
mirBase accessionMIMAT0046438
Sequence 
0- CGGGCCCGGAGCGCUGUCUGAGA -23
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Mature sequence

Xla-Mir-128-P2d_3p
mirBase accessionMIMAT0046439
Sequence 
36- UCACAGUGAACCGGUCUCUUU -57
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