Mir-128-P2

MirGeneDB ID

Ami-Mir-128-P2

Family name

MIR-128 (all species)

Seed

CACAGUG

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-128-1

Paralogues

Ami-Mir-128-P1

Orthologues

Aca-Mir-128-P2 Bta-Mir-128-P2 Cfa-Mir-128-P2 Cja-Mir-128-P2 Cli-Mir-128-P2 Cmi-Mir-128-P2 Cpi-Mir-128-P2 Cpo-Mir-128-P2 Dno-Mir-128-P2 Dre-Mir-128-P2a Dre-Mir-128-P2b Ebu-Mir-128 Eca-Mir-128-P2 Ete-Mir-128-P2 Gga-Mir-128-P2 Gja-Mir-128-P2 Gmo-Mir-128-P2a Gmo-Mir-128-P2b Hsa-Mir-128-P2 Laf-Mir-128-P2 Lch-Mir-128-P2 Loc-Mir-128-P2 Mal-Mir-128-P2a Mdo-Mir-128-P2 Mml-Mir-128-P2 Mmr-Mir-128-P2 Mmu-Mir-128-P2 Mun-Mir-128-P2 Neu-Mir-128-P2 Oan-Mir-128-P2 Ocu-Mir-128-P2 Pab-Mir-128-P2 Pbv-Mir-128-P2 Pma-Mir-128-o2 Rno-Mir-128-P2 Sha-Mir-128-P2 Spt-Mir-128-P2 Sto-Mir-128-P2 Tgu-Mir-128-P2 Tni-Mir-128-P2a Xla-Mir-128-P2c Xla-Mir-128-P2d Xtr-Mir-128-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017714267.1: 34149786-34149841 [-] UCSC

Precursor
(pre-Mir +30nt flank)

GGUUUGACCUUAUUCAUGAGCUGUUGGAUUCGGGGCCGUAACACUGUCUGAGAGGGUUACAUUUCUCACAGUGAACCGGUCUCUUUUUCAGCUGCUUCCUGGCUUCCUUUUUAAGG

Get precursor sequence

Structure

        10          20        30        40        50        
GGUUUGACCUUAUUCAU--|   U      UUC       UAA      CU    GGGU 
                   GAGC GUUGGA   GGGGCCG   CACUGU  GAGA    U
                   UUCG CGACUU   CUCUGGC   GUGACA  CUCU    A
GGAAUUUUUCCUUCGGUCC^   U      UUU       CAA      --    UUAC 
    110       100        90        80        70          60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Ami-Mir-128-P2_5p*

mirBase accession

MIMAT0038133

Sequence

0- CGGGGCCGUAACACUGUCUGAGA -23

Get sequence

Mature sequence

Ami-Mir-128-P2_3p

mirBase accession

MIMAT0038134

Sequence

35- UCACAGUGAACCGGUCUCUUU -56

Get sequence