MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-128-P2b

Family name MIR-128 (all species)
Seed CACAGUG
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-128-2
Paralogues Gmo-Mir-128-P1  Gmo-Mir-128-P2a 
Orthologues Aca-Mir-128-P2  Ami-Mir-128-P2  Bta-Mir-128-P2  Cfa-Mir-128-P2  Cja-Mir-128-P2  Cli-Mir-128-P2  Cmi-Mir-128-P2  Cpi-Mir-128-P2  Cpo-Mir-128-P2  Dno-Mir-128-P2  Dre-Mir-128-P2b  Ebu-Mir-128  Eca-Mir-128-P2  Ete-Mir-128-P2  Gga-Mir-128-P2  Gja-Mir-128-P2  Hsa-Mir-128-P2  Laf-Mir-128-P2  Lch-Mir-128-P2  Loc-Mir-128-P2  Mdo-Mir-128-P2  Mml-Mir-128-P2  Mmr-Mir-128-P2  Mmu-Mir-128-P2  Mun-Mir-128-P2  Neu-Mir-128-P2  Oan-Mir-128-P2  Ocu-Mir-128-P2  Pab-Mir-128-P2  Pbv-Mir-128-P2  Pma-Mir-128-o2  Rno-Mir-128-P2  Sha-Mir-128-P2  Spt-Mir-128-P2  Sto-Mir-128-P2  Tgu-Mir-128-P2  Xtr-Mir-128-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 contig99586: 1799-1855 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCGGUGUCGGGGCGUUGAGUGUCUGGGGACGGGGCCGGGGCGCUGUCUGAGAGGCCCUAUGAUUCUCACAGUGAACCGGUCUCUUUUCCUGCCCCUCCUUCCUCCUCCUCCUCCUC
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Structure
        10          20         30        40        50         
GCCGGUGUCGGGGCGUU--   U-| CU  GG C        GG      CU    GGCCC 
                   GAG  GU  GG  A GGGGCCGG  CGCUGU  GAGA     \
                   CUC  CG  CC  U CUCUGGCC  GUGACA  CUCU     U
CUCCUCCUCCUCCUCCUUC   CC^ U-  UU U        AA      --    UAGUA 
     110       100         90        80        70          60
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 3p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-128-P2b_5p*
mirBase accessionMIMAT0044085
Sequence 
0- CGGGGCCGGGGCGCUGUCUGAGA -23
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Mature sequence

Gmo-Mir-128-P2b_3p
mirBase accessionMIMAT0044070
Sequence 
36- UCACAGUGAACCGGUCUCUUU -57
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