| MirGeneDB ID | Lch-Mir-128-P2 |
|---|---|
| Family name | MIR-128 (all species) |
| Seed | CACAGUG |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-128-P1 Lch-Mir-128-P3 |
| Orthologues | Aca-Mir-128-P2 Ami-Mir-128-P2 Bta-Mir-128-P2 Cfa-Mir-128-P2 Cja-Mir-128-P2 Cli-Mir-128-P2 Cmi-Mir-128-P2 Cpi-Mir-128-P2 Cpo-Mir-128-P2 Dno-Mir-128-P2 Dre-Mir-128-P2a Dre-Mir-128-P2b Ebu-Mir-128 Eca-Mir-128-P2 Ete-Mir-128-P2 Gga-Mir-128-P2 Gja-Mir-128-P2 Gmo-Mir-128-P2a Gmo-Mir-128-P2b Hsa-Mir-128-P2 Laf-Mir-128-P2 Loc-Mir-128-P2 Mal-Mir-128-P2a Mdo-Mir-128-P2 Mml-Mir-128-P2 Mmr-Mir-128-P2 Mmu-Mir-128-P2 Mun-Mir-128-P2 Neu-Mir-128-P2 Oan-Mir-128-P2 Ocu-Mir-128-P2 Pab-Mir-128-P2 Pbv-Mir-128-P2 Pma-Mir-128-o2 Rno-Mir-128-P2 Sha-Mir-128-P2 Spt-Mir-128-P2 Sto-Mir-128-P2 Tgu-Mir-128-P2 Tni-Mir-128-P2a Xla-Mir-128-P2c Xla-Mir-128-P2d Xtr-Mir-128-P2 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
BAHO01265921.1: 3043-3098 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | GGAGCCCUGUCUGAGAGGAGCUGUUGGAUACGGGGCCGGAGCACUGUCUGAGAGGGCUGUAUUUCUCACAGUGAACCGGUCUCUUUUUCAGCUGUCUCGCUGUCUUCUGAUGAAAAGet precursor sequence |
| Structure | 10 20 30 40 50 GGAGCCCUGUCUGAGAG- -|U UAC AG CU GGGC GAG C GUUGGA GGGGCCGG CACUGU GAGA U CUC G CGACUU CUCUGGCC GUGACA CUCU G AAAAGUAGUCUUCUGUCG U^U UUU AA -- UUAU 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | Not in assembly but in trace archives. |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-128-P2_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- CGGGGCCGGAGCACUGUCUGAGA -23
Get sequence
|
| Mature sequence | Lch-Mir-128-P2_3p (predicted) |
| mirBase accession | None |
| Sequence |
35- UCACAGUGAACCGGUCUCUUU -56
Get sequence
|
