MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-128-P2

Family name MIR-128 (all species)
Seed CACAGUG
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-128-P1  Lch-Mir-128-P3 
Orthologues Aca-Mir-128-P2  Ami-Mir-128-P2  Bta-Mir-128-P2  Cfa-Mir-128-P2  Cja-Mir-128-P2  Cli-Mir-128-P2  Cmi-Mir-128-P2  Cpi-Mir-128-P2  Cpo-Mir-128-P2  Dno-Mir-128-P2  Dre-Mir-128-P2a  Dre-Mir-128-P2b  Ebu-Mir-128  Eca-Mir-128-P2  Ete-Mir-128-P2  Gga-Mir-128-P2  Gja-Mir-128-P2  Gmo-Mir-128-P2a  Gmo-Mir-128-P2b  Hsa-Mir-128-P2  Laf-Mir-128-P2  Loc-Mir-128-P2  Mal-Mir-128-P2a  Mdo-Mir-128-P2  Mml-Mir-128-P2  Mmr-Mir-128-P2  Mmu-Mir-128-P2  Mun-Mir-128-P2  Neu-Mir-128-P2  Oan-Mir-128-P2  Ocu-Mir-128-P2  Pab-Mir-128-P2  Pbv-Mir-128-P2  Pma-Mir-128-o2  Rno-Mir-128-P2  Sha-Mir-128-P2  Spt-Mir-128-P2  Sto-Mir-128-P2  Tgu-Mir-128-P2  Tni-Mir-128-P2a  Xla-Mir-128-P2c  Xla-Mir-128-P2d  Xtr-Mir-128-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
BAHO01265921.1: 3043-3098 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGAGCCCUGUCUGAGAGGAGCUGUUGGAUACGGGGCCGGAGCACUGUCUGAGAGGGCUGUAUUUCUCACAGUGAACCGGUCUCUUUUUCAGCUGUCUCGCUGUCUUCUGAUGAAAA
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Structure
        10         20         30        40        50        
GGAGCCCUGUCUGAGAG-   -|U      UAC        AG      CU    GGGC 
                  GAG C GUUGGA   GGGGCCGG  CACUGU  GAGA    U
                  CUC G CGACUU   CUCUGGCC  GUGACA  CUCU    G
AAAAGUAGUCUUCUGUCG   U^U      UUU        AA      --    UUAU 
    110       100        90        80        70          60
Deep sequencing
CommentNot in assembly but in trace archives.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-128-P2_5p* (predicted)

mirBase accessionNone
Sequence
0- CGGGGCCGGAGCACUGUCUGAGA -23
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Mature sequence

Lch-Mir-128-P2_3p (predicted)

mirBase accessionNone
Sequence
35- UCACAGUGAACCGGUCUCUUU -56
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