Mir-128-P2

MirGeneDB ID

Loc-Mir-128-P2

Family name

MIR-128 (all species)

Seed

CACAGUG

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-128-P1

Orthologues

Aca-Mir-128-P2 Ami-Mir-128-P2 Bta-Mir-128-P2 Cfa-Mir-128-P2 Cli-Mir-128-P2 Cmi-Mir-128-P2 Cpi-Mir-128-P2 Cpo-Mir-128-P2 Dno-Mir-128-P2 Dre-Mir-128-P2a Dre-Mir-128-P2b Ebu-Mir-128 Ete-Mir-128-P2 Gga-Mir-128-P2 Gja-Mir-128-P2 Gmo-Mir-128-P2a Gmo-Mir-128-P2b Hsa-Mir-128-P2 Lch-Mir-128-P2 Mal-Mir-128-P2a Mdo-Mir-128-P2 Mml-Mir-128-P2 Mmu-Mir-128-P2 Mun-Mir-128-P2 Oan-Mir-128-P2 Ocu-Mir-128-P2 Pbv-Mir-128-P2 Pma-Mir-128-o2 Rno-Mir-128-P2 Sha-Mir-128-P2 Spt-Mir-128-P2 Sto-Mir-128-P2 Tgu-Mir-128-P2 Tni-Mir-128-P2a Xla-Mir-128-P2c Xla-Mir-128-P2d Xtr-Mir-128-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG12: 3018042-3018097 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GCCUCGUGCCGCGAACUGAGCGCCCGGAUCCGGGGCCGGAGCACUGUCUGAGAGGACUACAAUUCUCACAGUGAACCGGUCUCUUUUUCAGCCGCUCCAUCCUCUCCGGCCAGUGG

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Structure

        10          20        30        40        50        
GCCUCGUGCCGCGAACU--|    CCC   UCC        AG      CU    GGAC 
                   GAGCG   GGA   GGGGCCGG  CACUGU  GAGA    U
                   CUCGC   CUU   CUCUGGCC  GUGACA  CUCU    A
GGUGACCGGCCUCUCCUAC^    CGA   UUU        AA      --    UAAC 
    110       100        90        80        70          60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-128-P2_5p*

mirBase accession

None

Sequence

0- CGGGGCCGGAGCACUGUCUGAGA -23

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Mature sequence

Loc-Mir-128-P2_3p

mirBase accession

None

Sequence

35- UCACAGUGAACCGGUCUCUUU -56

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