MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-128-P2

Family name MIR-128 (all species)
Seed CACAGUG
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-128-P1  Cmi-Mir-128-P3 
Orthologues Aca-Mir-128-P2  Ami-Mir-128-P2  Bta-Mir-128-P2  Cfa-Mir-128-P2  Cja-Mir-128-P2  Cli-Mir-128-P2  Cpi-Mir-128-P2  Cpo-Mir-128-P2  Dno-Mir-128-P2  Dre-Mir-128-P2a  Dre-Mir-128-P2b  Ebu-Mir-128  Eca-Mir-128-P2  Ete-Mir-128-P2  Gga-Mir-128-P2  Gja-Mir-128-P2  Gmo-Mir-128-P2a  Gmo-Mir-128-P2b  Hsa-Mir-128-P2  Laf-Mir-128-P2  Lch-Mir-128-P2  Loc-Mir-128-P2  Mal-Mir-128-P2a  Mdo-Mir-128-P2  Mml-Mir-128-P2  Mmr-Mir-128-P2  Mmu-Mir-128-P2  Mun-Mir-128-P2  Neu-Mir-128-P2  Oan-Mir-128-P2  Ocu-Mir-128-P2  Pab-Mir-128-P2  Pbv-Mir-128-P2  Pma-Mir-128-o2  Rno-Mir-128-P2  Sha-Mir-128-P2  Spt-Mir-128-P2  Sto-Mir-128-P2  Tgu-Mir-128-P2  Tni-Mir-128-P2a  Xla-Mir-128-P2c  Xla-Mir-128-P2d  Xtr-Mir-128-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635899.1: 2155576-2155631 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAUCAACAUUUCUGUGAGCUGUUGAAUGCGGGGCCGGAGCACUGACUGAGAGUACUACAUUUCUCACAGUGAACCGGUCUCUUUUUCAGCUGUUUCAUAAGCUACCGGGGGAAA
Get precursor sequence
Structure
        10          20        30        40        50        
AAAAUCAACAUUUCUGU--|   U      UGC        AG     AC     GUAC 
                   GAGC GUUGAA   GGGGCCGG  CACUG  UGAGA    U
                   UUUG CGACUU   CUCUGGCC  GUGAC  ACUCU    A
AAAGGGGGCCAUCGAAUAC^   U      UUU        AA     --     UUAC 
    110       100        90        80        70          60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-128-P2_5p*
mirBase accessionNone
Sequence 
0- CGGGGCCGGAGCACUGACUGAGA -23
Get sequence
Mature sequence

Cmi-Mir-128-P2_3p
mirBase accessionNone
Sequence 
35- UCACAGUGAACCGGUCUCUUU -56
Get sequence