MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-128-P1

Family name MIR-128 (all species)
Seed CACAGUG
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-128-P2  Cmi-Mir-128-P3 
Orthologues Aca-Mir-128-P1  Ami-Mir-128-P1  Bta-Mir-128-P1  Cfa-Mir-128-P1  Cja-Mir-128-P1  Cli-Mir-128-P1  Cpi-Mir-128-P1  Cpo-Mir-128-P1  Dno-Mir-128-P1  Dre-Mir-128-P1  Ebu-Mir-128  Eca-Mir-128-P1  Ete-Mir-128-P1  Gga-Mir-128-P1  Gja-Mir-128-P1  Gmo-Mir-128-P1  Hsa-Mir-128-P1  Laf-Mir-128-P1  Lch-Mir-128-P1  Loc-Mir-128-P1  Mal-Mir-128-P1  Mdo-Mir-128-P1  Mml-Mir-128-P1  Mmr-Mir-128-P1  Mmu-Mir-128-P1  Mun-Mir-128-P1  Neu-Mir-128-P1  Oan-Mir-128-P1  Ocu-Mir-128-P1  Pab-Mir-128-P1  Pbv-Mir-128-P1  Pma-Mir-128-o1  Rno-Mir-128-P1  Sha-Mir-128-P1  Spt-Mir-128-P1  Sto-Mir-128-P1  Tgu-Mir-128-P1  Tni-Mir-128-P1  Xla-Mir-128-P1a  Xla-Mir-128-P1b  Xtr-Mir-128-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635914.1: 296067-296124 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAGUUGGAUGCUAUAUGGAGCAGCUGGAGAGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCAGGGGCCACAUUCUCACCACGGCAUUG
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Structure
        10          20        30        40        50         
UAGUUGGAUGCUAUAUGGA--| AG    AG         UUA      AA    GUGAG 
                     GC  CUGG  AGGGGGCCG   CACUGU  GAGA     U
                     CG  GACC  UUCUCUGGC   GUGACA  CUCU     A
GUUACGGCACCACUCUUACAC^ GG    CU         CAA      --    GGACG 
      110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-128-P1_5p*
mirBase accessionNone
Sequence 
0- GGGGGCCGUUACACUGUAAGAGA -23
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Mature sequence

Cmi-Mir-128-P1_3p
mirBase accessionNone
Sequence 
37- UCACAGUGAACCGGUCUCUUU -58
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