MirGeneDB 2.1

MirGeneDB ID

Gga-Mir-128-P1

Family name MIR-128 (all species)
Seed CACAGUG
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-128-2
Paralogues Gga-Mir-128-P2 
Orthologues Aca-Mir-128-P1  Ami-Mir-128-P1  Bta-Mir-128-P1  Cfa-Mir-128-P1  Cli-Mir-128-P1  Cmi-Mir-128-P1  Cpi-Mir-128-P1  Cpo-Mir-128-P1  Dno-Mir-128-P1  Dre-Mir-128-P1  Ebu-Mir-128  Ete-Mir-128-P1  Gja-Mir-128-P1  Gmo-Mir-128-P1  Hsa-Mir-128-P1  Lch-Mir-128-P1  Loc-Mir-128-P1  Mal-Mir-128-P1  Mdo-Mir-128-P1  Mml-Mir-128-P1  Mmu-Mir-128-P1  Mun-Mir-128-P1  Oan-Mir-128-P1  Ocu-Mir-128-P1  Pbv-Mir-128-P1  Pma-Mir-128-o1  Rno-Mir-128-P1  Sha-Mir-128-P1  Spt-Mir-128-P1  Sto-Mir-128-P1  Tgu-Mir-128-P1  Tni-Mir-128-P1  Xla-Mir-128-P1a  Xla-Mir-128-P1b  Xtr-Mir-128-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)
2: 45455232-45455289 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCAGUUCCACAGGAAUGUCCAGCUGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGUGUCAUGCCACUCCUGAUGACA
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Structure
        10        20          30        40        50         
AGCAGUUCCACAGGAAUGUC--|   U             UUA      AA    GUGAG 
                      CAGC GGAAGGGGGGCCG   CACUGU  GAGA     U
                      GUCG CCUUUUCUCUGGC   GUGACA  CUCU     A
ACAGUAGUCCUCACCGUACUGU^   U             CAA      --    GGACG 
      110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-128-P1_5p*

mirBase accessionMIMAT0026506
Sequence
0- GGGGGCCGUUACACUGUAAGAGA -23
Get sequence
Proposed targets TargetScanVert: gga-miR-128-2-5p
miRDB: MIMAT0026506
Mature sequence

Gga-Mir-128-P1_3p

mirBase accessionMIMAT0001123
Sequence
37- UCACAGUGAACCGGUCUCUUU -58
Get sequence
Proposed targets TargetScanVert: gga-miR-128-3p
miRDB: MIMAT0001123