Mir-128-P1

MirGeneDB ID

Gga-Mir-128-P1

Family name

MIR-128 (all species)

Seed

CACAGUG

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-128-2

Paralogues

Gga-Mir-128-P2

Orthologues

Aca-Mir-128-P1 Ami-Mir-128-P1 Bta-Mir-128-P1 Cfa-Mir-128-P1 Cja-Mir-128-P1 Cli-Mir-128-P1 Cmi-Mir-128-P1 Cpi-Mir-128-P1 Cpo-Mir-128-P1 Dno-Mir-128-P1 Dre-Mir-128-P1 Ebu-Mir-128 Eca-Mir-128-P1 Ete-Mir-128-P1 Gja-Mir-128-P1 Gmo-Mir-128-P1 Hsa-Mir-128-P1 Laf-Mir-128-P1 Lch-Mir-128-P1 Loc-Mir-128-P1 Mal-Mir-128-P1 Mdo-Mir-128-P1 Mml-Mir-128-P1 Mmr-Mir-128-P1 Mmu-Mir-128-P1 Mun-Mir-128-P1 Neu-Mir-128-P1 Oan-Mir-128-P1 Ocu-Mir-128-P1 Pab-Mir-128-P1 Pbv-Mir-128-P1 Pma-Mir-128-o1 Rno-Mir-128-P1 Sha-Mir-128-P1 Spt-Mir-128-P1 Sto-Mir-128-P1 Tgu-Mir-128-P1 Tni-Mir-128-P1 Xla-Mir-128-P1a Xla-Mir-128-P1b Xtr-Mir-128-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

2: 45455232-45455289 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCAGUUCCACAGGAAUGUCCAGCUGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGUGUCAUGCCACUCCUGAUGACA

Get precursor sequence

Structure

        10        20          30        40        50         
AGCAGUUCCACAGGAAUGUC--|   U             UUA      AA    GUGAG 
                      CAGC GGAAGGGGGGCCG   CACUGU  GAGA     U
                      GUCG CCUUUUCUCUGGC   GUGACA  CUCU     A
ACAGUAGUCCUCACCGUACUGU^   U             CAA      --    GGACG 
      110       100        90        80        70          60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-128-P1_5p*

mirBase accession

MIMAT0026506

Sequence

0- GGGGGCCGUUACACUGUAAGAGA -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-128-2-5p
miRDB: MIMAT0026506

Mature sequence

Gga-Mir-128-P1_3p

mirBase accession

MIMAT0001123

Sequence

37- UCACAGUGAACCGGUCUCUUU -58

Get sequence

Proposed targets

TargetScanVert: gga-miR-128-3p
miRDB: MIMAT0001123