Mir-128-P1

MirGeneDB ID

Rno-Mir-128-P1

Family name

MIR-128 (all species)

Seed

CACAGUG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-128-2

Paralogues

Rno-Mir-128-P2

Orthologues

Aca-Mir-128-P1 Ami-Mir-128-P1 Bta-Mir-128-P1 Cfa-Mir-128-P1 Cja-Mir-128-P1 Cli-Mir-128-P1 Cmi-Mir-128-P1 Cpi-Mir-128-P1 Cpo-Mir-128-P1 Dno-Mir-128-P1 Dre-Mir-128-P1 Ebu-Mir-128 Eca-Mir-128-P1 Ete-Mir-128-P1 Gga-Mir-128-P1 Gja-Mir-128-P1 Gmo-Mir-128-P1 Hsa-Mir-128-P1 Laf-Mir-128-P1 Lch-Mir-128-P1 Loc-Mir-128-P1 Mal-Mir-128-P1 Mdo-Mir-128-P1 Mml-Mir-128-P1 Mmr-Mir-128-P1 Mmu-Mir-128-P1 Mun-Mir-128-P1 Neu-Mir-128-P1 Oan-Mir-128-P1 Ocu-Mir-128-P1 Pab-Mir-128-P1 Pbv-Mir-128-P1 Pma-Mir-128-o1 Sha-Mir-128-P1 Spt-Mir-128-P1 Sto-Mir-128-P1 Tgu-Mir-128-P1 Tni-Mir-128-P1 Xla-Mir-128-P1a Xla-Mir-128-P1b Xtr-Mir-128-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr8: 120378957-120379014 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGCCCCGGCAGCCACUGUGCAGUGGGAAGGGGGGCCGAUGCACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUACUGUGUCAAACUCCUAAGGAAUGCC

Get precursor sequence

Structure

        10          20        30        40        50         
GAGCCCCGGCAGCCACU--|UG       A          AUG      AA    GUGAG 
                   G  CAGUGGG AGGGGGGCCG   CACUGU  GAGA     U
                   U  GUCAUCC UUUCUCUGGC   GUGACA  CUCU     A
CCGUAAGGAAUCCUCAAAC^GU       C          CAA      --    GGACG 
      110       100        90        80        70          60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-128-P1_5p*

mirBase accession

MIMAT0017119

Sequence

0- GGGGGCCGAUGCACUGUAAGAGA -23

Get sequence

Proposed targets

TargetScanVert: rno-miR-128-2-5p
miRDB: MIMAT0017119

Mature sequence

Rno-Mir-128-P1_3p

mirBase accession

MIMAT0000834

Sequence

37- UCACAGUGAACCGGUCUCUUU -58

Get sequence

Proposed targets

microrna.org: MIMAT0000834
TargetScanVert: rno-miR-128-3p
miRDB: MIMAT0000834