MirGeneDB 2.1

MirGeneDB ID

Spt-Mir-128-P1

Family name MIR-128 (all species)
Seed CACAGUG
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-128-P2 
Orthologues Aca-Mir-128-P1  Ami-Mir-128-P1  Bta-Mir-128-P1  Cfa-Mir-128-P1  Cli-Mir-128-P1  Cmi-Mir-128-P1  Cpi-Mir-128-P1  Cpo-Mir-128-P1  Dno-Mir-128-P1  Dre-Mir-128-P1  Ebu-Mir-128  Ete-Mir-128-P1  Gga-Mir-128-P1  Gja-Mir-128-P1  Gmo-Mir-128-P1  Hsa-Mir-128-P1  Lch-Mir-128-P1  Loc-Mir-128-P1  Mal-Mir-128-P1  Mdo-Mir-128-P1  Mml-Mir-128-P1  Mmu-Mir-128-P1  Mun-Mir-128-P1  Oan-Mir-128-P1  Ocu-Mir-128-P1  Pbv-Mir-128-P1  Pma-Mir-128-o1  Rno-Mir-128-P1  Sha-Mir-128-P1  Sto-Mir-128-P1  Tgu-Mir-128-P1  Tni-Mir-128-P1  Xla-Mir-128-P1a  Xla-Mir-128-P1b  Xtr-Mir-128-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01001615.1: 1026073-1026130 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAGCUCCCUGCAGUGAUGUGCAGCUGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUUCCUACUGUGUCUUGCCACUUCUAAUUAAA
Get precursor sequence
Structure
        10          20        30        40        50         
UAGCUCCCUGCAGUGAU--|UG   CU             UUA      AA    GUGAG 
                   G  CAG  GGAAGGGGGGCCG   CACUGU  GAGA     U
                   U  GUC  CCUUUUCUCUGGC   GUGACA  CUCU     A
AAAUUAAUCUUCACCGUUC^GU   AU             CAA      --    GGACG 
      110       100        90        80        70          60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Star sequence

Spt-Mir-128-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- GGGGGCCGUUACACUGUAAGAGA -23
Get sequence
Mature sequence

Spt-Mir-128-P1_3p (predicted)

mirBase accessionNone
Sequence
37- UCACAGUGAACCGGUCUCUUU -58
Get sequence