| MirGeneDB ID | Spt-Mir-128-P1 |
|---|---|
| Family name | MIR-128 (all species) |
| Seed | CACAGUG |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-128-P2 |
| Orthologues | Aca-Mir-128-P1 Ami-Mir-128-P1 Bta-Mir-128-P1 Cfa-Mir-128-P1 Cja-Mir-128-P1 Cli-Mir-128-P1 Cmi-Mir-128-P1 Cpi-Mir-128-P1 Cpo-Mir-128-P1 Dno-Mir-128-P1 Dre-Mir-128-P1 Ebu-Mir-128 Eca-Mir-128-P1 Ete-Mir-128-P1 Gga-Mir-128-P1 Gja-Mir-128-P1 Gmo-Mir-128-P1 Hsa-Mir-128-P1 Laf-Mir-128-P1 Lch-Mir-128-P1 Loc-Mir-128-P1 Mal-Mir-128-P1 Mdo-Mir-128-P1 Mml-Mir-128-P1 Mmr-Mir-128-P1 Mmu-Mir-128-P1 Mun-Mir-128-P1 Neu-Mir-128-P1 Oan-Mir-128-P1 Ocu-Mir-128-P1 Pab-Mir-128-P1 Pbv-Mir-128-P1 Pma-Mir-128-o1 Rno-Mir-128-P1 Sha-Mir-128-P1 Sto-Mir-128-P1 Tgu-Mir-128-P1 Tni-Mir-128-P1 Xla-Mir-128-P1a Xla-Mir-128-P1b Xtr-Mir-128-P1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01001615.1: 1026073-1026130 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UAGCUCCCUGCAGUGAUGUGCAGCUGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUUCCUACUGUGUCUUGCCACUUCUAAUUAAAGet precursor sequence |
| Structure | 10 20 30 40 50 UAGCUCCCUGCAGUGAU--|UG CU UUA AA GUGAG G CAG GGAAGGGGGGCCG CACUGU GAGA U U GUC CCUUUUCUCUGGC GUGACA CUCU A AAAUUAAUCUUCACCGUUC^GU AU CAA -- GGACG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
| Star sequence | Spt-Mir-128-P1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGGGGCCGUUACACUGUAAGAGA -23
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|
| Mature sequence | Spt-Mir-128-P1_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- UCACAGUGAACCGGUCUCUUU -58
Get sequence
|
