| MirGeneDB ID | Cja-Mir-128-P1 |
|---|---|
| Family name | MIR-128 (all species) |
| Seed | CACAGUG |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-128-P2 |
| Orthologues | Aca-Mir-128-P1 Ami-Mir-128-P1 Bta-Mir-128-P1 Cfa-Mir-128-P1 Cli-Mir-128-P1 Cmi-Mir-128-P1 Cpi-Mir-128-P1 Cpo-Mir-128-P1 Dno-Mir-128-P1 Dre-Mir-128-P1 Ebu-Mir-128 Eca-Mir-128-P1 Ete-Mir-128-P1 Gga-Mir-128-P1 Gja-Mir-128-P1 Gmo-Mir-128-P1 Hsa-Mir-128-P1 Laf-Mir-128-P1 Lch-Mir-128-P1 Loc-Mir-128-P1 Mal-Mir-128-P1 Mdo-Mir-128-P1 Mml-Mir-128-P1 Mmr-Mir-128-P1 Mmu-Mir-128-P1 Mun-Mir-128-P1 Neu-Mir-128-P1 Oan-Mir-128-P1 Ocu-Mir-128-P1 Pab-Mir-128-P1 Pbv-Mir-128-P1 Pma-Mir-128-o1 Rno-Mir-128-P1 Sha-Mir-128-P1 Spt-Mir-128-P1 Sto-Mir-128-P1 Tgu-Mir-128-P1 Tni-Mir-128-P1 Xla-Mir-128-P1a Xla-Mir-128-P1b Xtr-Mir-128-P1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021931.1: 66867244-66867302 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CAGAGCCCGGCAGCCACUGUGCAGUGGGAAGGGGGGCCGAUACACUGUACGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUACUGUGUCACACUCCUAAUGGAAUGCGet precursor sequence |
| Structure | 10 20 30 40 50 60 CAGAGCCCGGCAGCCACU-|UG A AUA AC GUGAG G CAGUGGG AGGGGGGCCG CACUGU GAGA U U GUCAUCC UUUCUCUGGC GUGACA CUCU A CGUAAGGUAAUCCUCACAC^GU C CAA -- GGACG 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Star sequence | Cja-Mir-128-P1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGGGGGCCGAUACACUGUACGAGA -24
Get sequence
|
| Mature sequence | Cja-Mir-128-P1_3p |
| mirBase accession | None |
| Sequence |
38- UCACAGUGAACCGGUCUCUUU -59
Get sequence
|
