MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-128-P1

Family name MIR-128 (all species)
Seed CACAGUG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-128-2
Paralogues Xtr-Mir-128-P2 
Orthologues Aca-Mir-128-P1  Ami-Mir-128-P1  Bta-Mir-128-P1  Cfa-Mir-128-P1  Cja-Mir-128-P1  Cli-Mir-128-P1  Cmi-Mir-128-P1  Cpi-Mir-128-P1  Cpo-Mir-128-P1  Dno-Mir-128-P1  Dre-Mir-128-P1  Ebu-Mir-128  Eca-Mir-128-P1  Ete-Mir-128-P1  Gga-Mir-128-P1  Gja-Mir-128-P1  Gmo-Mir-128-P1  Hsa-Mir-128-P1  Laf-Mir-128-P1  Lch-Mir-128-P1  Loc-Mir-128-P1  Mal-Mir-128-P1  Mdo-Mir-128-P1  Mml-Mir-128-P1  Mmr-Mir-128-P1  Mmu-Mir-128-P1  Mun-Mir-128-P1  Neu-Mir-128-P1  Oan-Mir-128-P1  Ocu-Mir-128-P1  Pab-Mir-128-P1  Pbv-Mir-128-P1  Pma-Mir-128-o1  Rno-Mir-128-P1  Sha-Mir-128-P1  Spt-Mir-128-P1  Sto-Mir-128-P1  Tgu-Mir-128-P1  Tni-Mir-128-P1  Xla-Mir-128-P1a  Xla-Mir-128-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr6: 82768849-82768906 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCAAAACAAAUUUAUUGUGCAGCUGGAACGGGGGCCGUUACACUGUAAGAGAGUGAGUAGUAGGUCUCACAGUGAACCGGUCUCUUUUCUUACUGUAGCAAGUCACUUCAGAAAGAC
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Structure
        10          20        30        40        50         
UGCAAAACAAAUUUAUUG--|    CU    C        UUA      AA    GUGAG 
                    UGCAG  GGAA GGGGGCCG   CACUGU  GAGA     U
                    AUGUC  UCUU UCUCUGGC   GUGACA  CUCU     A
CAGAAAGACUUCACUGAACG^    AU    U        CAA      --    GGAUG 
      110       100        90        80        70          60
Deep sequencing
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CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
An Br Em Em He Ve
Star sequence

Xtr-Mir-128-P1_5p*
mirBase accessionNone
Sequence 
0- GGGGGCCGUUACACUGUAAGAGA -23
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Mature sequence

Xtr-Mir-128-P1_3p
mirBase accessionMIMAT0003589
Sequence 
37- UCACAGUGAACCGGUCUCUUU -58
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Proposed targets TargetScanVert: xtr-miR-128