Mir-128-P1

MirGeneDB ID

Gmo-Mir-128-P1

Family name

MIR-128 (all species)

Seed

CACAGUG

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-128-3

Paralogues

Gmo-Mir-128-P2a Gmo-Mir-128-P2b

Orthologues

Aca-Mir-128-P1 Ami-Mir-128-P1 Bta-Mir-128-P1 Cfa-Mir-128-P1 Cja-Mir-128-P1 Cli-Mir-128-P1 Cmi-Mir-128-P1 Cpi-Mir-128-P1 Cpo-Mir-128-P1 Dno-Mir-128-P1 Dre-Mir-128-P1 Ebu-Mir-128 Eca-Mir-128-P1 Ete-Mir-128-P1 Gga-Mir-128-P1 Gja-Mir-128-P1 Hsa-Mir-128-P1 Laf-Mir-128-P1 Lch-Mir-128-P1 Loc-Mir-128-P1 Mal-Mir-128-P1 Mdo-Mir-128-P1 Mml-Mir-128-P1 Mmr-Mir-128-P1 Mmu-Mir-128-P1 Mun-Mir-128-P1 Neu-Mir-128-P1 Oan-Mir-128-P1 Ocu-Mir-128-P1 Pab-Mir-128-P1 Pbv-Mir-128-P1 Pma-Mir-128-o1 Rno-Mir-128-P1 Sha-Mir-128-P1 Spt-Mir-128-P1 Sto-Mir-128-P1 Tgu-Mir-128-P1 Tni-Mir-128-P1 Xla-Mir-128-P1a Xla-Mir-128-P1b Xtr-Mir-128-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

scaffold05867: 2159-2217 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGUGUGAUGUGUGUGUGUGGCAGUAGGGAAGGGGGCCGUUACACUGUCAGAGAUGUAGUCUCAGGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGCCUCUACUCUUCAGGUUGACUG

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Structure

        10          20        30        40        50          
AGUGUGAUGUGUGUGUGU--|                   UUA      CA    UGUAGU 
                    GGCAGUAGGGAAGGGGGCCG   CACUGU  GAGA      \
                    CCGUCGUCCUUUUCUCUGGC   GUGACA  CUCU      C
GUCAGUUGGACUUCUCAUCU^                   CAA      --    GGGACU 
       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Star sequence

Gmo-Mir-128-P1_5p*

mirBase accession

None

Sequence

0- GGGGGCCGUUACACUGUCAGAGA -23

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Mature sequence

Gmo-Mir-128-P1_3p

mirBase accession

MIMAT0044070

Sequence

38- UCACAGUGAACCGGUCUCUUU -59

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