Mir-128-P1

MirGeneDB ID

Tgu-Mir-128-P1

Family name

MIR-128 (all species)

Seed

CACAGUG

Species

Zebra finch (Taeniopygia guttata)

MiRBase ID

tgu-mir-128-2

Paralogues

Tgu-Mir-128-P2

Orthologues

Aca-Mir-128-P1 Ami-Mir-128-P1 Bta-Mir-128-P1 Cfa-Mir-128-P1 Cja-Mir-128-P1 Cli-Mir-128-P1 Cmi-Mir-128-P1 Cpi-Mir-128-P1 Cpo-Mir-128-P1 Dno-Mir-128-P1 Dre-Mir-128-P1 Ebu-Mir-128 Eca-Mir-128-P1 Ete-Mir-128-P1 Gga-Mir-128-P1 Gja-Mir-128-P1 Gmo-Mir-128-P1 Hsa-Mir-128-P1 Laf-Mir-128-P1 Lch-Mir-128-P1 Loc-Mir-128-P1 Mal-Mir-128-P1 Mdo-Mir-128-P1 Mml-Mir-128-P1 Mmr-Mir-128-P1 Mmu-Mir-128-P1 Mun-Mir-128-P1 Neu-Mir-128-P1 Oan-Mir-128-P1 Ocu-Mir-128-P1 Pab-Mir-128-P1 Pbv-Mir-128-P1 Pma-Mir-128-o1 Rno-Mir-128-P1 Sha-Mir-128-P1 Spt-Mir-128-P1 Sto-Mir-128-P1 Tni-Mir-128-P1 Xla-Mir-128-P1a Xla-Mir-128-P1b Xtr-Mir-128-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(TaeGut1_add)

2: 48641436-48641493 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUGGCCGUCGGACCCCGUGCGGCUGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGUGUCACGCCACUCCGGAUGACU

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Structure

        10          20        30        40        50        
UGUGGCCGUCGGACCCC--|UG    U             UUA      A   GAGUGA 
                   G  CGGC GGAAGGGGGGCCG   CACUGU AGA      G
                   U  GUCG CCUUUUCUCUGGC   GUGACA UCU      U
UCAGUAGGCCUCACCGCAC^GU    U             CAA      C   GGACGA 
      110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma	Ma

Star sequence

Tgu-Mir-128-P1_5p*

mirBase accession

MIMAT0026977

Sequence

0- GGGGGCCGUUACACUGUAAGA -21

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Mature sequence

Tgu-Mir-128-P1_3p

mirBase accession

MIMAT0014513

Sequence

37- UCACAGUGAACCGGUCUCUUU -58

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