Mir-128-P1

MirGeneDB ID

Eca-Mir-128-P1

Family name

MIR-128 (all species)

Seed

CACAGUG

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-128-1

Paralogues

Eca-Mir-128-P2

Orthologues

Aca-Mir-128-P1 Ami-Mir-128-P1 Bta-Mir-128-P1 Cfa-Mir-128-P1 Cja-Mir-128-P1 Cli-Mir-128-P1 Cmi-Mir-128-P1 Cpi-Mir-128-P1 Cpo-Mir-128-P1 Dno-Mir-128-P1 Dre-Mir-128-P1 Ebu-Mir-128 Ete-Mir-128-P1 Gga-Mir-128-P1 Gja-Mir-128-P1 Gmo-Mir-128-P1 Hsa-Mir-128-P1 Laf-Mir-128-P1 Lch-Mir-128-P1 Loc-Mir-128-P1 Mal-Mir-128-P1 Mdo-Mir-128-P1 Mml-Mir-128-P1 Mmr-Mir-128-P1 Mmu-Mir-128-P1 Mun-Mir-128-P1 Neu-Mir-128-P1 Oan-Mir-128-P1 Ocu-Mir-128-P1 Pab-Mir-128-P1 Pbv-Mir-128-P1 Pma-Mir-128-o1 Rno-Mir-128-P1 Sha-Mir-128-P1 Spt-Mir-128-P1 Sto-Mir-128-P1 Tgu-Mir-128-P1 Tni-Mir-128-P1 Xla-Mir-128-P1a Xla-Mir-128-P1b Xtr-Mir-128-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009163.1: 50693939-50693996 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAGCUCGGCAGCCACUGUGCAGUGGGAAGGGGGGCCGAUGCACUGUACGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUACUGUGUCACACUCCUAAUGGGAUGC

Get precursor sequence

Structure

        10          20        30        40        50         
AGAGCUCGGCAGCCACU--|UG       A          AUG      AC    GUGAG 
                   G  CAGUGGG AGGGGGGCCG   CACUGU  GAGA     U
                   U  GUCAUCC UUUCUCUGGC   GUGACA  CUCU     A
CGUAGGGUAAUCCUCACAC^GU       C          CAA      --    GGACG 
      110       100        90        80        70          60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-128-P1_5p* (predicted)

mirBase accession

None

Sequence

0- GGGGGCCGAUGCACUGUACGAGA -23

Get sequence

Mature sequence

Eca-Mir-128-P1_3p

mirBase accession

MIMAT0013076

Sequence

37- UCACAGUGAACCGGUCUCUUU -58

Get sequence