Mir-128-P1

MirGeneDB ID

Tni-Mir-128-P1

Family name

MIR-128 (all species)

Seed

CACAGUG

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-128-2

Paralogues

Tni-Mir-128-P2a

Orthologues

Aca-Mir-128-P1 Ami-Mir-128-P1 Bta-Mir-128-P1 Cfa-Mir-128-P1 Cja-Mir-128-P1 Cli-Mir-128-P1 Cmi-Mir-128-P1 Cpi-Mir-128-P1 Cpo-Mir-128-P1 Dno-Mir-128-P1 Dre-Mir-128-P1 Ebu-Mir-128 Eca-Mir-128-P1 Ete-Mir-128-P1 Gga-Mir-128-P1 Gja-Mir-128-P1 Gmo-Mir-128-P1 Hsa-Mir-128-P1 Laf-Mir-128-P1 Lch-Mir-128-P1 Loc-Mir-128-P1 Mal-Mir-128-P1 Mdo-Mir-128-P1 Mml-Mir-128-P1 Mmr-Mir-128-P1 Mmu-Mir-128-P1 Mun-Mir-128-P1 Neu-Mir-128-P1 Oan-Mir-128-P1 Ocu-Mir-128-P1 Pab-Mir-128-P1 Pbv-Mir-128-P1 Pma-Mir-128-o1 Rno-Mir-128-P1 Sha-Mir-128-P1 Spt-Mir-128-P1 Sto-Mir-128-P1 Tgu-Mir-128-P1 Xla-Mir-128-P1a Xla-Mir-128-P1b Xtr-Mir-128-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

21: 1237210-1237268 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGUGUGUGUCGGACCGUGGCGGUAGAGGAGGGGGCCGUUACACUGUCAGAGAUGUAGUCUGAGGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGCUUCUGCUCCACCUGCUGACGC

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Structure

        10          20        30        40        50          
GAGUGUGUGUCGGACCGU--|       AG          UUA      CA    UGUAGU 
                    GGCGGUAG  GAGGGGGCCG   CACUGU  GAGA      \
                    UCGUCGUC  UUUCUCUGGC   GUGACA  CUCU      C
CGCAGUCGUCCACCUCGUCU^       CU          CAA      --    GGGAGU 
       110       100        90        80          70

Deep sequencing

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Comment

There is a second Drosha cut -1 on the 3p arm.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-128-P1_5p*

mirBase accession

None

Sequence

0- GGGGGCCGUUACACUGUCAGAGA -23

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Mature sequence

Tni-Mir-128-P1_3p

mirBase accession

MIMAT0003019

Sequence

38- UCACAGUGAACCGGUCUCUUU -59

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