Mir-599

MirGeneDB ID

Eca-Mir-599

Family name

MIR-599 (all species)

Seed

UUGAUAA

Species

Horse (Equus caballus)

MiRBase ID

Paralogues

Orthologues

Ami-Mir-599 Bta-Mir-599 Cfa-Mir-599 Cja-Mir-599 Cli-Mir-599 Cpi-Mir-599 Ete-Mir-599 Hsa-Mir-599 Laf-Mir-599 Lch-Mir-599 Mdo-Mir-599 Mml-Mir-599 Mmr-Mir-599 Mmu-Mir-599 Mun-Mir-599 Neu-Mir-599 Oan-Mir-599 Ocu-Mir-599 Pab-Mir-599 Pbv-Mir-599 Sha-Mir-599 Spt-Mir-599 Tgu-Mir-599

Node of Origin (locus)

Sarcopterygii

Node of Origin (family)

Sarcopterygii

Genome context
(GCA_002863925.1_EquCab3.0)

CM009156.1: 47139795-47139853 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CACUGCCACAGACAUGCUGUCCACAGUGUGUUUGAUAAGCUGACAUGGGACAGGGACUCUUUUCACUGUUGUGUCAGUUUAUCAAACCCAUACCUGGACGACUGUCAGUUCAGUUAGAG

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Structure

        10          20         30        40        50         
CACUGCCACAGACAUGC--      CA-|  U                 GG    GGGACU 
                   UGUCCA   GUG GUUUGAUAAGCUGACAU  GACA      C
                   GCAGGU   UAC CAAACUAUUUGACUGUG  UUGU      U
GAGAUUGACUUGACUGUCA      CCA^  C                 --    CACUUU 
       110       100        90        80          70        60

Deep sequencing

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3' NTU

Unknown

Motifs

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-599_5p (predicted)

mirBase accession

None

Sequence

0- UUUGAUAAGCUGACAUGGGACA -22

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Star sequence

Eca-Mir-599_3p* (predicted)

mirBase accession

None

Sequence

38- UUGUGUCAGUUUAUCAAACCC -59

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