MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-599

Family name MIR-599 (all species)
Seed UUGAUAA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues
Orthologues Ami-Mir-599  Bta-Mir-599  Cfa-Mir-599  Cja-Mir-599  Cli-Mir-599  Cpi-Mir-599  Eca-Mir-599  Ete-Mir-599  Hsa-Mir-599  Laf-Mir-599  Mdo-Mir-599  Mml-Mir-599  Mmr-Mir-599  Mmu-Mir-599  Mun-Mir-599  Neu-Mir-599  Oan-Mir-599  Ocu-Mir-599  Pab-Mir-599  Pbv-Mir-599  Sha-Mir-599  Spt-Mir-599  Tgu-Mir-599 
Node of Origin (locus) Sarcopterygii
Node of Origin (family) Sarcopterygii
Genome context
(LatCha1_add)
JH126816.1: 823702-823760 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAGAUAUAAGCAUUCACAGUCCAUAGUGUGUUUGAUAAGCAGACAUGAGACAGGCAUCUUUCUCACUGUUGUGUCAGUUCAUCAAACCCAUACCUGGACAUCAUUUUCUACUCCAGCUU
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Structure
        10          20         30        40        50         
UAGAUAUAAGCAUUCACA--     UA-|  U       A   A     GA    GGCAUC 
                    GUCCA   GUG GUUUGAU AGC GACAU  GACA      U
                    CAGGU   UAC CAAACUA UUG CUGUG  UUGU      U
UUCGACCUCAUCUUUUACUA     CCA^  C       C   A     --    CACUCU 
       110       100        90        80          70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Lch-Mir-599_5p (predicted)

mirBase accessionNone
Sequence
0- UUUGAUAAGCAGACAUGAGACA -22
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Star sequence

Lch-Mir-599_3p* (predicted)

mirBase accessionNone
Sequence
38- UUGUGUCAGUUCAUCAAACCC -59
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