MirGeneDB ID | Lch-Mir-599 |
---|---|
Family name | MIR-599 (all species) |
Seed | UUGAUAA |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | |
Orthologues | Ami-Mir-599 Bta-Mir-599 Cfa-Mir-599 Cja-Mir-599 Cli-Mir-599 Cpi-Mir-599 Eca-Mir-599 Ete-Mir-599 Hsa-Mir-599 Laf-Mir-599 Mdo-Mir-599 Mml-Mir-599 Mmr-Mir-599 Mmu-Mir-599 Mun-Mir-599 Neu-Mir-599 Oan-Mir-599 Ocu-Mir-599 Pab-Mir-599 Pbv-Mir-599 Sha-Mir-599 Spt-Mir-599 Tgu-Mir-599 |
Node of Origin (locus) | Sarcopterygii |
Node of Origin (family) | Sarcopterygii |
Genome context (LatCha1_add) |
JH126816.1: 823702-823760 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | UAGAUAUAAGCAUUCACAGUCCAUAGUGUGUUUGAUAAGCAGACAUGAGACAGGCAUCUUUCUCACUGUUGUGUCAGUUCAUCAAACCCAUACCUGGACAUCAUUUUCUACUCCAGCUUGet precursor sequence |
Structure | 10 20 30 40 50 UAGAUAUAAGCAUUCACA-- UA-| U A A GA GGCAUC GUCCA GUG GUUUGAU AGC GACAU GACA U CAGGU UAC CAAACUA UUG CUGUG UUGU U UUCGACCUCAUCUUUUACUA CCA^ C C A -- CACUCU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Mature sequence | Lch-Mir-599_5p (predicted) |
mirBase accession | None |
Sequence |
0- UUUGAUAAGCAGACAUGAGACA -22
Get sequence
|
Star sequence | Lch-Mir-599_3p* (predicted) |
mirBase accession | None |
Sequence |
38- UUGUGUCAGUUCAUCAAACCC -59
Get sequence
|