MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-599

Family name MIR-599 (all species)
Seed UUGAUAA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-599
Paralogues
Orthologues Bta-Mir-599  Cfa-Mir-599  Cli-Mir-599  Cpi-Mir-599  Ete-Mir-599  Hsa-Mir-599  Lch-Mir-599  Mdo-Mir-599  Mml-Mir-599  Mmu-Mir-599  Mun-Mir-599  Oan-Mir-599  Ocu-Mir-599  Pbv-Mir-599  Sha-Mir-599  Spt-Mir-599  Tgu-Mir-599 
Node of Origin (locus) Sarcopterygii
Node of Origin (family) Sarcopterygii
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017712118.1: 18806757-18806815 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-599)
Mir-875 NW_017712118.1: 18806611-18806667 [+] UCSC
Mir-599 NW_017712118.1: 18806757-18806815 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CAAUAUGAAAGACAUAUUGUCCAUAGUGUGUUUGAUAAGCUGACAUGGGACAGGAGUUCUUUUCACUGUUGUGUCAGUUUAUCAAACCCAUACCUGGACAUCAGUCAAAUACUAUAAAA
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Structure
        10          20         30        40        50         
CAAUAUGAAAGACAUAU--      UA-|  U                 GG    GGAGUU 
                   UGUCCA   GUG GUUUGAUAAGCUGACAU  GACA      C
                   ACAGGU   UAC CAAACUAUUUGACUGUG  UUGU      U
AAAAUAUCAUAAACUGACU      CCA^  C                 --    CACUUU 
       110       100        90        80          70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Ami-Mir-599_5p

mirBase accessionMIMAT0038305
Sequence
0- UUUGAUAAGCUGACAUGGGACA -22
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Co-mature sequence

Ami-Mir-599_3p

mirBase accessionMIMAT0038306
Sequence
37- GUUGUGUCAGUUUAUCAAACCC -59
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