MirGeneDB ID | Tgu-Mir-599 |
Family name |
MIR-599 (all species) |
Seed |
UGUGUCA |
Species |
Zebra finch (Taeniopygia guttata) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Ami-Mir-599
Bta-Mir-599
Cfa-Mir-599
Cli-Mir-599
Cpi-Mir-599
Ete-Mir-599
Hsa-Mir-599
Lch-Mir-599
Mdo-Mir-599
Mml-Mir-599
Mmu-Mir-599
Mun-Mir-599
Oan-Mir-599
Ocu-Mir-599
Pbv-Mir-599
Sha-Mir-599
Spt-Mir-599
|
Node of Origin (locus) |
Sarcopterygii
|
Node of Origin (family) |
Sarcopterygii
|
Genome context (TaeGut1_add) |
2: 130011475-130011534 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAGGAUGGAAGGCAAACUGUCCUCAGUGUGUUUCAUAAGCUGACGUGGGACAGGAUUUCUUUUUGCUGCUGUGUCAGUAUAUCAAAAUCAUACCUGGACAUCAAUCAAAUUGUAUCUGAA
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGGAUGGAAGGCAAAC--- UCA --| C A UG GACAGGAUU
UGUCC GUGUG UUU AUA GCUGACG G U
ACAGG CAUAC AAA UAU UGACUGU C C
AAGUCUAUGUUAAACUAACU UC- UA^ C A GU GUCGUUUUU
. 110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Tgu-Mir-599_5p* (predicted) |
mirBase accession | None |
Sequence |
0- UUUCAUAAGCUGACGUGGGACA -22
Get sequence
|
Mature sequence |
Tgu-Mir-599_3p (predicted) |
mirBase accession | None |
Sequence |
38- CUGUGUCAGUAUAUCAAAAUCA -60
Get sequence
|