MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-599

Family name MIR-599 (all species)
Seed UGUGUCA
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-599
Paralogues
Orthologues Ami-Mir-599  Bta-Mir-599  Cfa-Mir-599  Cja-Mir-599  Cpi-Mir-599  Eca-Mir-599  Ete-Mir-599  Hsa-Mir-599  Laf-Mir-599  Lch-Mir-599  Mdo-Mir-599  Mml-Mir-599  Mmr-Mir-599  Mmu-Mir-599  Mun-Mir-599  Neu-Mir-599  Oan-Mir-599  Ocu-Mir-599  Pab-Mir-599  Pbv-Mir-599  Sha-Mir-599  Spt-Mir-599  Tgu-Mir-599 
Node of Origin (locus) Sarcopterygii
Node of Origin (family) Sarcopterygii
Genome context
(colLiv2)		 scaffold1: 1574686-1574745 [+]
Clustered miRNAs
(< 50kb from Mir-599)		 Mir-875 scaffold1: 1574523-1574579 [+]
Mir-599 scaffold1: 1574686-1574745 [+]
Precursor
(pre-Mir +30nt flank)
CCAAGUAGCAGACAGACUGUCCACAGUGUGUUUGAUAAGCUGACAUGGGACAGGAUUUCUUUUCACUGUUGUGUCAGUAUAUCAAACUCAUACCUGGUCAUCAGUCAAAUUCUAUACAGA
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Structure
        10           20         30        40        50         
CCAAGUAGCAGACAGAC---  U   CA-|  U        A        GG   AGGAUUU 
                    UG CCA   GUG GUUUGAUA GCUGACAU  GAC       C
                    AC GGU   UAC CAAACUAU UGACUGUG  UUG       U
AGACAUAUCUUAAACUGACU  U   CCA^  U        A        --   UCACUUU 
.       110       100        90        80          70        60
Deep sequencing
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CommentThis miRNA is likely mono-adenylated at the 3' end given the offset in addition to phylogenetic considerations despite the templated adenosine.
3' NTU No
MotifsNo
Tissue expression
-   +
Li Mi Ov Pe Te To
Star sequence

Cli-Mir-599_5p*
mirBase accessionNone
Sequence 
0- UUUGAUAAGCUGACAUGGGAC -21
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Mature sequence

Cli-Mir-599_3p
mirBase accessionMIMAT0038666
Sequence 
38- UUGUGUCAGUAUAUCAAACUCA -60
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