MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-875

Family name MIR-875 (all species)
Seed AUACCUC
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-875
Paralogues
Orthologues Aca-Mir-875  Ami-Mir-875  Bta-Mir-875  Cfa-Mir-875  Cja-Mir-875  Cpi-Mir-875  Ebu-Mir-875  Eca-Mir-875  Ete-Mir-875  Gja-Mir-875  Hsa-Mir-875  Laf-Mir-875  Mdo-Mir-875  Mml-Mir-875  Mmr-Mir-875  Mmu-Mir-875  Mun-Mir-875  Oan-Mir-875  Ocu-Mir-875  Pab-Mir-875  Pbv-Mir-875  Pma-Mir-875  Rno-Mir-875  Sha-Mir-875  Spt-Mir-875 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold1: 1574523-1574579 [+]
Clustered miRNAs
(< 50kb from Mir-875)		 Mir-875 scaffold1: 1574523-1574579 [+]
Mir-599 scaffold1: 1574686-1574745 [+]
Precursor
(pre-Mir +30nt flank)
UUUUAGCUGAUUCACCUAGUUUAGUGGUACAAUACCUCAGUCUUUUCGGAUGUUCUAUAAAUUCACCUGGAAAUACUGAGGUUGCGUUUCACUGAACACAGACUUCACAUAUUUGAU
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Structure
        10          20        30        40        50        
UUUUAGCUGAUUCACCUA--|        U  AAU        C       A  UUCUA 
                    GUUUAGUGG AC   ACCUCAGU UUUUCGG UG     \
                    CAAGUCACU UG   UGGAGUCA AAAGGUC AC     U
UAGUUUAUACACUUCAGACA^        U  CGU        U       C  UUAAA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-875_5p
mirBase accessionMIMAT0038668
Sequence 
0- AAUACCUCAGUCUUUUCGGAUG -22
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Star sequence

Cli-Mir-875_3p*
mirBase accessionMIMAT0038669
Sequence 
35- CCUGGAAAUACUGAGGUUGCGU -57
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