Mir-875

MirGeneDB ID

Mml-Mir-875

Family name

MIR-875 (all species)

Seed

AUACCUC

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-875

Paralogues

Orthologues

Aca-Mir-875 Ami-Mir-875 Bta-Mir-875 Cfa-Mir-875 Cja-Mir-875 Cli-Mir-875 Cpi-Mir-875 Ebu-Mir-875 Eca-Mir-875 Ete-Mir-875 Gja-Mir-875 Hsa-Mir-875 Laf-Mir-875 Mdo-Mir-875 Mmr-Mir-875 Mmu-Mir-875 Mun-Mir-875 Oan-Mir-875 Ocu-Mir-875 Pab-Mir-875 Pbv-Mir-875 Pma-Mir-875 Rno-Mir-875 Sha-Mir-875 Spt-Mir-875

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014343.1: 99810115-99810170 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-875)

Mir-599 CM014343.1: 99809968-99810026 [-] UCSC Ensembl
Mir-875 CM014343.1: 99810115-99810170 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUUGGAAAAUUCUUAAAGUUUAGUGGUACUAUACCUCAGUUUUAUCAGGUGUUCCUAAAAUCACCUGGAAAUACUGAGGUUGUGUCUCACUGAACGCAAGCUACGUGACUUCUAU

Get precursor sequence

Structure

        10          20        30        40        50       
UUUUGGAAAAUUCUUAAA--|       GU  UAU        U  A       UUCC 
                    GUUUAGUG  AC   ACCUCAGU UU UCAGGUG    U
                    CAAGUCAC  UG   UGGAGUCA AA GGUCCAC    A
UAUCUUCAGUGCAUCGAACG^       UC  UGU        U  A       UAAA 
    110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-875_5p

mirBase accession

MIMAT0006517

Sequence

0- UAUACCUCAGUUUUAUCAGGUG -22

Get sequence

Proposed targets

TargetScanVert: mml-miR-875-5p

Star sequence

Mml-Mir-875_3p*

mirBase accession

MIMAT0006518

Sequence

34- CCUGGAAAUACUGAGGUUGUGU -56

Get sequence

Proposed targets

TargetScanVert: mml-miR-875-3p