MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-875

Family name MIR-875 (all species)
Seed AUACCUC
Species Cow (Bos taurus)
MiRBase ID bta-mir-875
Paralogues
Orthologues Aca-Mir-875  Ami-Mir-875  Cfa-Mir-875  Cja-Mir-875  Cli-Mir-875  Cpi-Mir-875  Ebu-Mir-875  Eca-Mir-875  Ete-Mir-875  Gja-Mir-875  Hsa-Mir-875  Laf-Mir-875  Mdo-Mir-875  Mml-Mir-875  Mmr-Mir-875  Mmu-Mir-875  Mun-Mir-875  Oan-Mir-875  Ocu-Mir-875  Pab-Mir-875  Pbv-Mir-875  Pma-Mir-875  Rno-Mir-875  Sha-Mir-875  Spt-Mir-875 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037341.1: 64795370-64795426 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-875)		 Mir-875 NC_037341.1: 64795370-64795426 [+] UCSC Ensembl
Mir-599 NC_037341.1: 64795515-64795573 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUGGAUAAUUCUUAAAGUUUAGUGGGACUAUACCUCAGUUUUAUCAGGUGUUAUUUAAAAUCACCUGGAAAUACUGAGGUUGUGUUUCACUGAACAUGAGCUCCGUGACUUCUAU
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Structure
        10          20        30        40        50        
UUUUGGAUAAUUCUUAAA--|       GG  UAU        U  A       UUAUU 
                    GUUUAGUG  AC   ACCUCAGU UU UCAGGUG     \
                    CAAGUCAC  UG   UGGAGUCA AA GGUCCAC     U
UAUCUUCAGUGCCUCGAGUA^       UU  UGU        U  A       UAAAA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-875_5p
mirBase accessionMIMAT0009379
Sequence 
0- UAUACCUCAGUUUUAUCAGGUG -22
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Proposed targets TargetScanVert: bta-miR-875
Star sequence

Bta-Mir-875_3p* (predicted)
mirBase accessionNone
Sequence 
35- CCUGGAAAUACUGAGGUUGUGU -57
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