MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-875

Family name MIR-875 (all species)
Seed AUACCUC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-875
Paralogues
Orthologues Aca-Mir-875  Ami-Mir-875  Bta-Mir-875  Cfa-Mir-875  Cja-Mir-875  Cli-Mir-875  Cpi-Mir-875  Ebu-Mir-875  Eca-Mir-875  Ete-Mir-875  Gja-Mir-875  Hsa-Mir-875  Laf-Mir-875  Mdo-Mir-875  Mml-Mir-875  Mmr-Mir-875  Mmu-Mir-875  Mun-Mir-875  Oan-Mir-875  Ocu-Mir-875  Pab-Mir-875  Pbv-Mir-875  Pma-Mir-875  Sha-Mir-875  Spt-Mir-875 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr7: 74423239-74423295 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCUGGGGAGCAUUCCAAGUUCUGUGGUACUAUACCUCAGUUUUAUCAGGUGUUCAUUCAAAUCACCUGAAAACACUGAGGCUGCGUCCCACUGAACAUCAGCUUCCUGGACUCUGU
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Structure
        10          20        30        40        50        
GGCUGGGGAGCAUUCCAA--|   U    U  UAUA       U  A       UUCAU 
                    GUUC GUGG AC    CCUCAGU UU UCAGGUG     \
                    CAAG CACC UG    GGAGUCA AA AGUCCAC     U
UGUCUCAGGUCCUUCGACUA^   U    C  CGUC       C  A       UAAAC 
     110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-875_5p
mirBase accessionMIMAT0012842
Sequence 
0- UAUACCUCAGUUUUAUCAGGUG -22
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Proposed targets microrna.org: MIMAT0012842
TargetScanVert: rno-miR-875
miRDB: MIMAT0012842
Star sequence

Rno-Mir-875_3p*
mirBase accessionNone
Sequence 
35- CCUGAAAACACUGAGGCUGCGU -57
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