MirGeneDB 3.0
MirGeneDB ID

Pbv-Mir-875

Family name MIR-875 (all species)
Seed AUACCUC
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-875
Paralogues
Orthologues Aca-Mir-875  Ami-Mir-875  Bta-Mir-875  Cfa-Mir-875  Cja-Mir-875  Cli-Mir-875  Cpi-Mir-875  Ebu-Mir-875  Eca-Mir-875  Ete-Mir-875  Gja-Mir-875  Hsa-Mir-875  Laf-Mir-875  Mdo-Mir-875  Mml-Mir-875  Mmr-Mir-875  Mmu-Mir-875  Mun-Mir-875  Oan-Mir-875  Ocu-Mir-875  Pab-Mir-875  Pma-Mir-875  Rno-Mir-875  Sha-Mir-875  Spt-Mir-875 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)		 KE953831.1: 12662-12720 [-]
Clustered miRNAs
(< 50kb from Mir-875)		 Mir-599 KE953831.1: 12525-12583 [-]
Mir-875 KE953831.1: 12662-12720 [-]
Precursor
(pre-Mir +30nt flank)
UUGCUUCAGGUUCUGUUGGUUUAGUGGUACAAUACCUCAGCCUUAUCAGGUGCUAUAUAUAUAUUCACCUGGAAGUUCUGAGGUUGAGUUUCACUGAACGUGAGCUUCAUGUUUACUAC
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Structure
        10          20        30        40         50         
UUGCUUCAGGUUCUGUUG--         U  AAU       C-|  A       CUAUAU 
                    GUUUAGUGG AC   ACCUCAG  CUU UCAGGUG      \
                    CAAGUCACU UG   UGGAGUC  GAA GGUCCAC      A
CAUCAUUUGUACUUCGAGUG         U  AGU       UU^  -       UUAUAU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Pbv-Mir-875_5p
mirBase accessionMIMAT0039073
Sequence 
0- AAUACCUCAGCCUUAUCAGGUG -22
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Star sequence

Pbv-Mir-875_3p* (predicted)
mirBase accessionNone
Sequence 
37- CCUGGAAGUUCUGAGGUUGAGU -59
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