| MirGeneDB ID | Cja-Mir-875 |
|---|---|
| Family name | MIR-875 (all species) |
| Seed | AUACCUC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-875 Ami-Mir-875 Bta-Mir-875 Cfa-Mir-875 Cli-Mir-875 Cpi-Mir-875 Ebu-Mir-875 Eca-Mir-875 Ete-Mir-875 Gja-Mir-875 Hsa-Mir-875 Laf-Mir-875 Mdo-Mir-875 Mml-Mir-875 Mmr-Mir-875 Mmu-Mir-875 Mun-Mir-875 Oan-Mir-875 Ocu-Mir-875 Pab-Mir-875 Pbv-Mir-875 Pma-Mir-875 Rno-Mir-875 Sha-Mir-875 Spt-Mir-875 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021930.1: 95577669-95577724 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UUUUGGAAAAUUCUUAAAGUUUAGUGGUACUAUACCUCAGUUUUAUCAGGUGUUCUUAAAAUCACCUGGAAAUACUGAGGUUGUGUCUCACUGAACAUAAGCUUCGUGACGUCUAUGet precursor sequence |
| Structure | 10 20 30 40 50 UUUUGGAAAAUUCUUAAA--| GU UAU U A UUCU GUUUAGUG AC ACCUCAGU UU UCAGGUG U CAAGUCAC UG UGGAGUCA AA GGUCCAC A UAUCUGCAGUGCUUCGAAUA^ UC UGU U A UAAA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-875_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAUACCUCAGUUUUAUCAGGUG -22
Get sequence
|
| Star sequence | Cja-Mir-875_3p* (predicted) |
| mirBase accession | None |
| Sequence |
34- CCUGGAAAUACUGAGGUUGUGU -56
Get sequence
|
