MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-875

Family name MIR-875 (all species)
Seed AUACCUC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-875
Paralogues
Orthologues Aca-Mir-875  Bta-Mir-875  Cfa-Mir-875  Cja-Mir-875  Cli-Mir-875  Cpi-Mir-875  Ebu-Mir-875  Eca-Mir-875  Ete-Mir-875  Gja-Mir-875  Hsa-Mir-875  Laf-Mir-875  Mdo-Mir-875  Mml-Mir-875  Mmr-Mir-875  Mmu-Mir-875  Mun-Mir-875  Oan-Mir-875  Ocu-Mir-875  Pab-Mir-875  Pbv-Mir-875  Pma-Mir-875  Rno-Mir-875  Sha-Mir-875  Spt-Mir-875 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017712118.1: 18806611-18806667 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-875)		 Mir-875 NW_017712118.1: 18806611-18806667 [+] UCSC
Mir-599 NW_017712118.1: 18806757-18806815 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AAUUGCCCAUUUCAUAUAGUUUAGUGGUACAAUACCUCAGUCUUUUCAGGUGUUCUAUAAAAUCACCUGGAAAUAUUGAGGUUGAGUUUCACUGAACACAGGCUUCAUGUUUUUUGU
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Structure
        10          20        30        40        50        
AAUUGCCCAUUUCAUAUA--|        U  AAU        C          UUCUA 
                    GUUUAGUGG AC   ACCUCAGU UUUUCAGGUG     \
                    CAAGUCACU UG   UGGAGUUA AAAGGUCCAC     U
UGUUUUUUGUACUUCGGACA^        U  AGU        U          UAAAA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-875_5p
mirBase accessionMIMAT0038308
Sequence 
0- AAUACCUCAGUCUUUUCAGGUG -22
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Star sequence

Ami-Mir-875_3p* (predicted)
mirBase accessionNone
Sequence 
35- CCUGGAAAUAUUGAGGUUGAGU -57
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