MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-6715

Family name MIR-6715 (all species)
Seed CAAACCA
Species Horse (Equus caballus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-6715  Cfa-Mir-6715  Cja-Mir-6715  Cpo-Mir-6715  Ete-Mir-6715  Hsa-Mir-6715  Laf-Mir-6715  Mml-Mir-6715  Mmr-Mir-6715  Mmu-Mir-6715  Ocu-Mir-6715  Pab-Mir-6715  Rno-Mir-6715 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)
CM009148.1: 19423680-19423736 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAUGGCUGAGUUCUCUAUGGGCUGCGUCCACAGGCACAGCCAGUUUGAGCAUGUUAACUAAAUUGCCAAACCAGUCCUGCCUGUAAACACAGCCUUUACCCGCAACUGGAGUCUUC
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Structure
        10          20        30        40        50        
AAAUGGCUGAGUUCUCUAU--|     C  CC       CA  CA     A   UGUUA 
                     GGGCUG GU  ACAGGCA  GC  GUUUG GCA     A
                     UCCGAC CA  UGUCCGU  UG  CAAAC CGU     C
CUUCUGAGGUCAACGCCCAUU^     A  AA       CC  AC     -   UAAAU 
     110       100        90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-6715_5p* (predicted)

mirBase accessionNone
Sequence
0- ACAGGCACAGCCAGUUUGAGCA -22
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Mature sequence

Eca-Mir-6715_3p (predicted)

mirBase accessionNone
Sequence
36- CCAAACCAGUCCUGCCUGUAA -57
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