MirGeneDB ID | Laf-Mir-6715 |
Family name |
MIR-6715 (all species) |
Seed |
CAGGCAC |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-6715
Cfa-Mir-6715
Cja-Mir-6715
Cpo-Mir-6715
Eca-Mir-6715
Ete-Mir-6715
Hsa-Mir-6715
Mml-Mir-6715
Mmr-Mir-6715
Mmu-Mir-6715
Ocu-Mir-6715
Pab-Mir-6715
Rno-Mir-6715
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010037.1: 6782074-6782129 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUGGUUUGUGUCCACUCCUGGGCUGUGUCCACAGGCACAGCGGGUUCGAGCAUUUGACUGAAUUGCCAAACCAGUUGUUCCUGUAGCCACAGCCUUUACCUGCUCCUGAGUCCUCC
Get precursor sequence
|
Structure | 10 20 30 40 50
AUGGUUUGUGUCCACUCCU--| UCC C G CGA UUUGA
GGGCUGUG ACAGG ACAGC GGUU GCA \
UCCGACAC UGUCC UGUUG CCAA CGU C
CCUCCUGAGUCCUCGUCCAUU^ CGA U A AC- UAAGU
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Laf-Mir-6715_5p (predicted) |
mirBase accession | None |
Sequence |
0- ACAGGCACAGCGGGUUCGAGCA -22
Get sequence
|
Co-mature sequence |
Laf-Mir-6715_3p (predicted) |
mirBase accession | None |
Sequence |
35- CCAAACCAGUUGUUCCUGUAG -56
Get sequence
|