MirGeneDB 3.0

MirGeneDB ID

Laf-Mir-6715

Family name MIR-6715 (all species)
Seed CAGGCAC
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Bta-Mir-6715  Cfa-Mir-6715  Cja-Mir-6715  Cpo-Mir-6715  Eca-Mir-6715  Ete-Mir-6715  Hsa-Mir-6715  Mml-Mir-6715  Mmr-Mir-6715  Mmu-Mir-6715  Ocu-Mir-6715  Pab-Mir-6715  Rno-Mir-6715 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000001905.1_Loxafr3.0)
GL010037.1: 6782074-6782129 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGGUUUGUGUCCACUCCUGGGCUGUGUCCACAGGCACAGCGGGUUCGAGCAUUUGACUGAAUUGCCAAACCAGUUGUUCCUGUAGCCACAGCCUUUACCUGCUCCUGAGUCCUCC
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Structure
        10          20        30        40        50        
AUGGUUUGUGUCCACUCCU--|       UCC     C     G    CGA   UUUGA 
                     GGGCUGUG   ACAGG ACAGC GGUU   GCA     \
                     UCCGACAC   UGUCC UGUUG CCAA   CGU     C
CCUCCUGAGUCCUCGUCCAUU^       CGA     U     A    AC-   UAAGU 
    110       100        90        80        70         60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Wh
Mature sequence

Laf-Mir-6715_5p (predicted)

mirBase accessionNone
Sequence
0- ACAGGCACAGCGGGUUCGAGCA -22
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Co-mature sequence

Laf-Mir-6715_3p (predicted)

mirBase accessionNone
Sequence
35- CCAAACCAGUUGUUCCUGUAG -56
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