MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-551-P1

Family name MIR-551 (all species)
Seed CGACCCA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-551-P2 
Orthologues Ami-Mir-551-P1  Cfa-Mir-551-P1  Cja-Mir-551-P1  Cli-Mir-551-P1  Cmi-Mir-551-P1  Cpi-Mir-551-P1  Eca-Mir-551-P1  Hsa-Mir-551-P1  Laf-Mir-551-P1  Lch-Mir-551-P1  Loc-Mir-551-P1  Mdo-Mir-551-P1  Mml-Mir-551-P1  Mmr-Mir-551-P1  Neu-Mir-551-P1  Pab-Mir-551-P1  Pbv-Mir-551-P1  Pma-Mir-551-o1  Sha-Mir-551-P1  Spt-Mir-551-P1  Xla-Mir-551-P1a  Xla-Mir-551-P1b  Xtr-Mir-551-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015162006.1: 202251-202310 [-]
Precursor
(pre-Mir +30nt flank)
AUCGCUGCCUGUGUCCUGCACUUGAUCUUGGAAAUCAAGAAUGGGUGAAGCCUGUCAGAAUAAUACUAGGCGACCCAUACUUGGUUUCAAAGGUCAGCAGGAAAUCUGCCCUUCCAUUUG
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Structure
        10             20        30        40        50        60
AUCGCUGCCUGUGUCCU-----| ACU       G         A      GAA    GUCAGA 
                      GC   UGAUCUU GAAAUCAAG AUGGGU   GCCU      A
                      CG   ACUGGAA CUUUGGUUC UACCCA   CGGA      U
GUUUACCUUCCCGUCUAAAGGA^ ---       A         A      G--    UCAUAA 
.       110       100           90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Gja-Mir-551-P1_5p* (predicted)
mirBase accessionNone
Sequence 
0- GAAAUCAAGAAUGGGUGAAGCCU -23
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Mature sequence

Gja-Mir-551-P1_3p
mirBase accessionNone
Sequence 
39- GCGACCCAUACUUGGUUUCAA -60
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