| MirGeneDB ID | Lch-Mir-551-P1 |
|---|---|
| Family name | MIR-551 (all species) |
| Seed | CGACCCA |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-551-P2 |
| Orthologues | Ami-Mir-551-P1 Cfa-Mir-551-P1 Cja-Mir-551-P1 Cli-Mir-551-P1 Cmi-Mir-551-P1 Cpi-Mir-551-P1 Eca-Mir-551-P1 Gja-Mir-551-P1 Hsa-Mir-551-P1 Laf-Mir-551-P1 Loc-Mir-551-P1 Mdo-Mir-551-P1 Mml-Mir-551-P1 Mmr-Mir-551-P1 Neu-Mir-551-P1 Pab-Mir-551-P1 Pbv-Mir-551-P1 Pma-Mir-551-o1 Sha-Mir-551-P1 Spt-Mir-551-P1 Xla-Mir-551-P1a Xla-Mir-551-P1b Xtr-Mir-551-P1 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126562.1: 6823825-6823885 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | CUGGGCUCUAACCAGCCCCAGUAGGCCUAGGAGAUCAAGUGUGGGUGAAGCCUGUAGAGAUUGUUGCUAGGCGACCCAUAUUUGGUUUCAGAGGCCGGUGGGAAAGUACAGCAAACAACUUGet precursor sequence |
| Structure | 10 20 30 40 50 60 CUGGGCUCUAACCAGCC---| GUA AG GAA GUAGAGA CCA GGCCU GAGAUCAAGUGUGGGU GCCU \ GGU CCGGA CUUUGGUUUAUACCCA CGGA U UUCAACAAACGACAUGAAAG^ GG- GA G-- UCGUUGU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-551-P1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GAGAUCAAGUGUGGGUGAAGCCU -23
Get sequence
|
| Mature sequence | Lch-Mir-551-P1_3p (predicted) |
| mirBase accession | None |
| Sequence |
40- GCGACCCAUAUUUGGUUUCAG -61
Get sequence
|
