MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-551-P1

Family name MIR-551 (all species)
Seed CGACCCA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-551-P2 
Orthologues Ami-Mir-551-P1  Bta-Mir-551-P1  Cfa-Mir-551-P1  Cli-Mir-551-P1  Cmi-Mir-551-P1  Cpi-Mir-551-P1  Gja-Mir-551-P1  Hsa-Mir-551-P1  Loc-Mir-551-P1  Mdo-Mir-551-P1  Mml-Mir-551-P1  Pbv-Mir-551-P1  Pma-Mir-551-o1  Sha-Mir-551-P1  Spt-Mir-551-P1  Xla-Mir-551-P1a  Xla-Mir-551-P1b  Xtr-Mir-551-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126562.1: 6823825-6823885 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUGGGCUCUAACCAGCCCCAGUAGGCCUAGGAGAUCAAGUGUGGGUGAAGCCUGUAGAGAUUGUUGCUAGGCGACCCAUAUUUGGUUUCAGAGGCCGGUGGGAAAGUACAGCAAACAACUU
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Structure
        10           20        30        40        50        60 
CUGGGCUCUAACCAGCC---|  GUA     AG                GAA    GUAGAGA 
                    CCA   GGCCU  GAGAUCAAGUGUGGGU   GCCU       \
                    GGU   CCGGA  CUUUGGUUUAUACCCA   CGGA       U
UUCAACAAACGACAUGAAAG^  GG-     GA                G--    UCGUUGU 
 .       110       100         90        80          70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-551-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- GAGAUCAAGUGUGGGUGAAGCCU -23
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Mature sequence

Lch-Mir-551-P1_3p (predicted)

mirBase accessionNone
Sequence
40- GCGACCCAUAUUUGGUUUCAG -61
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