MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-551-P1

Family name MIR-551 (all species)
Seed AAGUCAA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-551-P2 
Orthologues Ami-Mir-551-P1  Cfa-Mir-551-P1  Cja-Mir-551-P1  Cli-Mir-551-P1  Cmi-Mir-551-P1  Cpi-Mir-551-P1  Eca-Mir-551-P1  Gja-Mir-551-P1  Hsa-Mir-551-P1  Laf-Mir-551-P1  Lch-Mir-551-P1  Mdo-Mir-551-P1  Mml-Mir-551-P1  Mmr-Mir-551-P1  Neu-Mir-551-P1  Pab-Mir-551-P1  Pbv-Mir-551-P1  Pma-Mir-551-o1  Sha-Mir-551-P1  Spt-Mir-551-P1  Xla-Mir-551-P1a  Xla-Mir-551-P1b  Xtr-Mir-551-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG25: 8460322-8460381 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGACUCUGGGACCCUCUCAGCCAGACUCCCGAAGUCAAGCGUGGGUGGAGCCUGUGAGACAGCCGCCAGGCGACCCAUUCUUGGUUUCAGGGGUCACUGGGGCUGCCAAGUUCACCCCCA
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Structure
        10        20          30        40        50        60
GGACUCUGGGACCCUCUCAG   --|     C   GU    C      GGA    GUGAGA 
                    CCA  GACUCC GAA  CAAG GUGGGU   GCCU      C
                    GGU  CUGGGG CUU  GUUC UACCCA   CGGA      A
ACCCCCACUUGAACCGUCGG   CA^     A   UG    U      G--    CCGCCG 
.       110       100        90        80          70
Deep sequencing
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3' NTU Yes
MotifsUGUG in loop
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-551-P1_5p
mirBase accessionNone
Sequence 
0- GAAGUCAAGCGUGGGUGGAGCCU -23
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Co-mature sequence

Loc-Mir-551-P1_3p
mirBase accessionNone
Sequence 
39- GCGACCCAUUCUUGGUUUCAG -60
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