MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-551-P2

Family name MIR-551 (all species)
Seed CGACCCA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-551-P1 
Orthologues Aca-Mir-551-P2  Ami-Mir-551-P2  Bta-Mir-551-P2  Cfa-Mir-551-P2  Cja-Mir-551-P2  Cli-Mir-551-P2  Cmi-Mir-551-P2  Cpi-Mir-551-P2  Cpo-Mir-551-P2  Dno-Mir-551-P2  Dre-Mir-551-P2  Eca-Mir-551-P2  Ete-Mir-551-P2  Gga-Mir-551-P2  Gja-Mir-551-P2  Gmo-Mir-551-P2  Hsa-Mir-551-P2  Laf-Mir-551-P2  Lch-Mir-551-P2  Mal-Mir-551-P2  Mdo-Mir-551-P2  Mml-Mir-551-P2  Mmr-Mir-551-P2  Mmu-Mir-551-P2  Mun-Mir-551-P2  Neu-Mir-551-P2  Oan-Mir-551-P2  Ocu-Mir-551-P2  Pab-Mir-551-P2  Pbv-Mir-551-P2  Rno-Mir-551-P2  Sha-Mir-551-P2  Spt-Mir-551-P2  Sto-Mir-551-P2  Tgu-Mir-551-P2  Xla-Mir-551-P2a  Xla-Mir-551-P2b  Xtr-Mir-551-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG14: 20170203-20170263 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAACACUCAAAACAAGCCUAUGAGGCCCUAGAAAUCAAGUGUGGGUGAGGCCUGGGAUUAAAGCUUUAUGGCGACCCAUACUUGGUUUCUGAGGCUUUGUGGAAAGACUCCACUAUUUUUC
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Structure
        10          20        30        40        50        60 
AAACACUCAAAACAAGC--|  UG     C                  GAG   UGGGAUUA 
                   CUA  AGGCC UAGAAAUCAAGUGUGGGU   GCC        \
                   GGU  UUCGG GUCUUUGGUUCAUACCCA   CGG        A
CUUUUUAUCACCUCAGAAA^  GU     A                  G--   UAUUUCGA 
 .       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-551-P2_5p*
mirBase accessionNone
Sequence 
0- GAAAUCAAGUGUGGGUGAGGCCU -23
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Mature sequence

Loc-Mir-551-P2_3p
mirBase accessionNone
Sequence 
40- GCGACCCAUACUUGGUUUCUG -61
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