| MirGeneDB ID | Pab-Mir-551-P2 |
|---|---|
| Family name | MIR-551 (all species) |
| Seed | CGACCCA |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-551-P1 |
| Orthologues | Aca-Mir-551-P2 Ami-Mir-551-P2 Bta-Mir-551-P2 Cfa-Mir-551-P2 Cja-Mir-551-P2 Cli-Mir-551-P2 Cmi-Mir-551-P2 Cpi-Mir-551-P2 Cpo-Mir-551-P2 Dno-Mir-551-P2 Dre-Mir-551-P2 Eca-Mir-551-P2 Ete-Mir-551-P2 Gga-Mir-551-P2 Gja-Mir-551-P2 Gmo-Mir-551-P2 Hsa-Mir-551-P2 Laf-Mir-551-P2 Lch-Mir-551-P2 Loc-Mir-551-P2 Mal-Mir-551-P2 Mdo-Mir-551-P2 Mml-Mir-551-P2 Mmr-Mir-551-P2 Mmu-Mir-551-P2 Mun-Mir-551-P2 Neu-Mir-551-P2 Oan-Mir-551-P2 Ocu-Mir-551-P2 Pbv-Mir-551-P2 Rno-Mir-551-P2 Sha-Mir-551-P2 Spt-Mir-551-P2 Sto-Mir-551-P2 Tgu-Mir-551-P2 Xla-Mir-551-P2a Xla-Mir-551-P2b Xtr-Mir-551-P2 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM068843.1: 178495612-178495671 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AGAUCUGCCAGAUGUGCUCUCCUGGCCCAUGAAAUCAAGUGUGGGUGAGACCUGGUGCAGAACGGGAAGGCGACCCAUACUUGGUUUCAGAGGCUGUGAGAAUACCUGCAAUUUAGAGGGGet precursor sequence |
| Structure | 10 20 30 40 50 60 AGAUCUGCCAGAUGUGC--| C CA GAGA GGUGCA UCUC UGGCC UGAAAUCAAGUGUGGGU CCU G AGAG GUCGG ACUUUGGUUCAUACCCA GGA A GGGAGAUUUAACGUCCAUA^ U AG GC-- AGGGCA . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Yes |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Pab-Mir-551-P2_5p* |
| mirBase accession | None |
| Sequence |
0- GAAAUCAAGUGUGGGUGAGACCU -23
Get sequence
|
| Mature sequence | Pab-Mir-551-P2_3p |
| mirBase accession | None |
| Sequence |
39- GCGACCCAUACUUGGUUUCAG -60
Get sequence
|
