MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-551-P2

Family name MIR-551 (all species)
Seed CGACCCA
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-551-P1 
Orthologues Aca-Mir-551-P2  Ami-Mir-551-P2  Bta-Mir-551-P2  Cfa-Mir-551-P2  Cli-Mir-551-P2  Cmi-Mir-551-P2  Cpi-Mir-551-P2  Cpo-Mir-551-P2  Dno-Mir-551-P2  Dre-Mir-551-P2  Eca-Mir-551-P2  Ete-Mir-551-P2  Gga-Mir-551-P2  Gja-Mir-551-P2  Gmo-Mir-551-P2  Hsa-Mir-551-P2  Laf-Mir-551-P2  Lch-Mir-551-P2  Loc-Mir-551-P2  Mal-Mir-551-P2  Mdo-Mir-551-P2  Mml-Mir-551-P2  Mmr-Mir-551-P2  Mmu-Mir-551-P2  Mun-Mir-551-P2  Neu-Mir-551-P2  Oan-Mir-551-P2  Ocu-Mir-551-P2  Pab-Mir-551-P2  Pbv-Mir-551-P2  Rno-Mir-551-P2  Sha-Mir-551-P2  Spt-Mir-551-P2  Sto-Mir-551-P2  Tgu-Mir-551-P2  Xla-Mir-551-P2a  Xla-Mir-551-P2b  Xtr-Mir-551-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021931.1: 11497880-11497939 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAUUUGCCAGAUGUGCUCUCCUGGCCCGUGAAAUCAAGCGUGGGUGAGACCUGGUGCAGAAAGGGAAGGCGACCCAUACUUGGUUUCAGAGGCUGCGAGAAUACCUGCAAUUCAGAGGA
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Structure
        10          20        30        40        50        60
AGAUUUGCCAGAUGUGC--|   C     CG          CG     GAGA   GGUGCA 
                   UCUC UGGCC  UGAAAUCAAG  UGGGU    CCU      G
                   AGAG GUCGG  ACUUUGGUUC  ACCCA    GGA      A
AGGAGACUUAACGUCCAUA^   C     AG          AU     GC--   AGGGAA 
.       110       100        90        80          70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-551-P2_5p* (predicted)
mirBase accessionNone
Sequence 
0- GAAAUCAAGCGUGGGUGAGACCU -23
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Mature sequence

Cja-Mir-551-P2_3p (predicted)
mirBase accessionNone
Sequence 
39- GCGACCCAUACUUGGUUUCAG -60
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