Mir-551-P2

MirGeneDB ID

Eca-Mir-551-P2

Family name

MIR-551 (all species)

Seed

CGACCCA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-551b

Paralogues

Eca-Mir-551-P1

Orthologues

Aca-Mir-551-P2 Ami-Mir-551-P2 Bta-Mir-551-P2 Cfa-Mir-551-P2 Cja-Mir-551-P2 Cli-Mir-551-P2 Cmi-Mir-551-P2 Cpi-Mir-551-P2 Cpo-Mir-551-P2 Dno-Mir-551-P2 Dre-Mir-551-P2 Ete-Mir-551-P2 Gga-Mir-551-P2 Gja-Mir-551-P2 Gmo-Mir-551-P2 Hsa-Mir-551-P2 Laf-Mir-551-P2 Lch-Mir-551-P2 Loc-Mir-551-P2 Mal-Mir-551-P2 Mdo-Mir-551-P2 Mml-Mir-551-P2 Mmr-Mir-551-P2 Mmu-Mir-551-P2 Mun-Mir-551-P2 Neu-Mir-551-P2 Oan-Mir-551-P2 Ocu-Mir-551-P2 Pab-Mir-551-P2 Pbv-Mir-551-P2 Rno-Mir-551-P2 Sha-Mir-551-P2 Spt-Mir-551-P2 Sto-Mir-551-P2 Tgu-Mir-551-P2 Xla-Mir-551-P2a Xla-Mir-551-P2b Xtr-Mir-551-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009166.1: 11547230-11547289 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGUCUGCCAGAUGUGCUCUCCUGGCCCAUGAAAUCAAGCGUGGGUGAGACCUGGUGCAGAACGGGAAGGCGACCCAUACUUGGUUUCAGAGGCUGUGAGAAUACCUACAGUUUUGAGAG

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Structure

        10          20        30        40        50        60
AGGUCUGCCAGAUGUGC--|   C     CA          CG     GAGA   GGUGCA 
                   UCUC UGGCC  UGAAAUCAAG  UGGGU    CCU      G
                   AGAG GUCGG  ACUUUGGUUC  ACCCA    GGA      A
GAGAGUUUUGACAUCCAUA^   U     AG          AU     GC--   AGGGCA 
.       110       100        90        80          70

Deep sequencing

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3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-551-P2_5p*

mirBase accession

None

Sequence

0- GAAAUCAAGCGUGGGUGAGACCU -23

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Mature sequence

Eca-Mir-551-P2_3p

mirBase accession

MIMAT0013094

Sequence

39- GCGACCCAUACUUGGUUUCAG -60

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