MirGeneDB ID | Eca-Mir-551-P2 |
Family name |
MIR-551 (all species) |
Seed |
CGACCCA |
Species |
Horse (Equus caballus) |
MiRBase ID |
eca-mir-551b
|
Paralogues |
Eca-Mir-551-P1
|
Orthologues |
Aca-Mir-551-P2
Ami-Mir-551-P2
Bta-Mir-551-P2
Cfa-Mir-551-P2
Cja-Mir-551-P2
Cli-Mir-551-P2
Cmi-Mir-551-P2
Cpi-Mir-551-P2
Cpo-Mir-551-P2
Dno-Mir-551-P2
Dre-Mir-551-P2
Ete-Mir-551-P2
Gga-Mir-551-P2
Gja-Mir-551-P2
Gmo-Mir-551-P2
Hsa-Mir-551-P2
Laf-Mir-551-P2
Lch-Mir-551-P2
Loc-Mir-551-P2
Mal-Mir-551-P2
Mdo-Mir-551-P2
Mml-Mir-551-P2
Mmr-Mir-551-P2
Mmu-Mir-551-P2
Mun-Mir-551-P2
Neu-Mir-551-P2
Oan-Mir-551-P2
Ocu-Mir-551-P2
Pab-Mir-551-P2
Pbv-Mir-551-P2
Rno-Mir-551-P2
Sha-Mir-551-P2
Spt-Mir-551-P2
Sto-Mir-551-P2
Tgu-Mir-551-P2
Xla-Mir-551-P2a
Xla-Mir-551-P2b
Xtr-Mir-551-P2
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
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Genome context (GCA_002863925.1_EquCab3.0) |
CM009166.1: 11547230-11547289 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGGUCUGCCAGAUGUGCUCUCCUGGCCCAUGAAAUCAAGCGUGGGUGAGACCUGGUGCAGAACGGGAAGGCGACCCAUACUUGGUUUCAGAGGCUGUGAGAAUACCUACAGUUUUGAGAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGGUCUGCCAGAUGUGC--| C CA CG GAGA GGUGCA
UCUC UGGCC UGAAAUCAAG UGGGU CCU G
AGAG GUCGG ACUUUGGUUC ACCCA GGA A
GAGAGUUUUGACAUCCAUA^ U AG AU GC-- AGGGCA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Star sequence |
Eca-Mir-551-P2_5p* |
mirBase accession | None |
Sequence |
0- GAAAUCAAGCGUGGGUGAGACCU -23
Get sequence
|
Mature sequence |
Eca-Mir-551-P2_3p |
mirBase accession | MIMAT0013094 |
Sequence |
39- GCGACCCAUACUUGGUUUCAG -60
Get sequence
|