MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-551-P2a

Family name MIR-551 (all species)
Seed CGACCCA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-551-P1a  Xla-Mir-551-P1b  Xla-Mir-551-P2b 
Orthologues Aca-Mir-551-P2  Ami-Mir-551-P2  Bta-Mir-551-P2  Cfa-Mir-551-P2  Cja-Mir-551-P2  Cli-Mir-551-P2  Cmi-Mir-551-P2  Cpi-Mir-551-P2  Cpo-Mir-551-P2  Dno-Mir-551-P2  Dre-Mir-551-P2  Eca-Mir-551-P2  Ete-Mir-551-P2  Gga-Mir-551-P2  Gja-Mir-551-P2  Gmo-Mir-551-P2  Hsa-Mir-551-P2  Laf-Mir-551-P2  Lch-Mir-551-P2  Loc-Mir-551-P2  Mal-Mir-551-P2  Mdo-Mir-551-P2  Mml-Mir-551-P2  Mmr-Mir-551-P2  Mmu-Mir-551-P2  Mun-Mir-551-P2  Neu-Mir-551-P2  Oan-Mir-551-P2  Ocu-Mir-551-P2  Pab-Mir-551-P2  Pbv-Mir-551-P2  Rno-Mir-551-P2  Sha-Mir-551-P2  Spt-Mir-551-P2  Sto-Mir-551-P2  Tgu-Mir-551-P2  Xtr-Mir-551-P2 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030732.1: 109161745-109161805 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUCACAAGGGACUGAUCACUCUGACCUUAGAAAUCAAGCUUGGGUUAGACCUGGUUCUUAUACACUGAGGCGACCCAUACUUGGUUUCUGAGGCAGAAGUGCUAUAGCUGCAAAAGUACA
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Structure
        10          20         30        40        50          
AAUCACAAGGGACUGAU--   -|   A              CU      AGACCUGGUUCU 
                   CAC UCUG CCUUAGAAAUCAAG  UGGGUU            \
                   GUG AGAC GGAGUCUUUGGUUC  ACCCAG            U
ACAUGAAAACGUCGAUAUC   A^   -              AU      CGGAGUCACAUA 
 .       110       100         90        80        70
Deep sequencing
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Em
Star sequence

Xla-Mir-551-P2a_5p* (predicted)
mirBase accessionNone
Sequence 
0- GAAAUCAAGCUUGGGUUAGAC -21
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Mature sequence

Xla-Mir-551-P2a_3p
mirBase accessionNone
Sequence 
40- GCGACCCAUACUUGGUUUCUG -61
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