MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-551-P2

Family name MIR-551 (all species)
Seed CGACCCA
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-551b
Paralogues Cli-Mir-551-P1 
Orthologues Aca-Mir-551-P2  Ami-Mir-551-P2  Bta-Mir-551-P2  Cfa-Mir-551-P2  Cja-Mir-551-P2  Cmi-Mir-551-P2  Cpi-Mir-551-P2  Cpo-Mir-551-P2  Dno-Mir-551-P2  Dre-Mir-551-P2  Eca-Mir-551-P2  Ete-Mir-551-P2  Gga-Mir-551-P2  Gja-Mir-551-P2  Gmo-Mir-551-P2  Hsa-Mir-551-P2  Laf-Mir-551-P2  Lch-Mir-551-P2  Loc-Mir-551-P2  Mal-Mir-551-P2  Mdo-Mir-551-P2  Mml-Mir-551-P2  Mmr-Mir-551-P2  Mmu-Mir-551-P2  Mun-Mir-551-P2  Neu-Mir-551-P2  Oan-Mir-551-P2  Ocu-Mir-551-P2  Pab-Mir-551-P2  Pbv-Mir-551-P2  Rno-Mir-551-P2  Sha-Mir-551-P2  Spt-Mir-551-P2  Sto-Mir-551-P2  Tgu-Mir-551-P2  Xla-Mir-551-P2a  Xla-Mir-551-P2b  Xtr-Mir-551-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold698: 3540893-3540953 [-]
Precursor
(pre-Mir +30nt flank)
CAGCUCGCCCAAAGCCGCCCCAUGGCUCCAGAAAUCAAGGGUGGGUAAGACCUCGUCAGCAAAGUUUAAGGCGACCCAUACUUGGUUUCAGGGGCUGUGUGGCUCUCGUCACCGCUGCGUA
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Structure
        10         20         30        40        50        60 
CAGCUCGCCCAAAGCCGC-  -|        A         GG     AAGA   CGUCAGC 
                   CC CAUGGCUCC GAAAUCAAG  UGGGU    CCU       \
                   GG GUGUCGGGG CUUUGGUUC  ACCCA    GGA       A
AUGCGUCGCCACUGCUCUC  U^        A         AU     GC--   AUUUGAA 
 .       110       100        90        80          70
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Li Mi Ov Pe Te To
Star sequence

Cli-Mir-551-P2_5p*
mirBase accessionMIMAT0038664
Sequence 
0- GAAAUCAAGGGUGGGUAAGACCU -23
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Mature sequence

Cli-Mir-551-P2_3p
mirBase accessionMIMAT0038665
Sequence 
40- GCGACCCAUACUUGGUUUCAG -61
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