MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-551-P2

Family name MIR-551 (all species)
Seed CGACCCA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-551-P1 
Orthologues Aca-Mir-551-P2  Ami-Mir-551-P2  Bta-Mir-551-P2  Cfa-Mir-551-P2  Cli-Mir-551-P2  Cmi-Mir-551-P2  Cpi-Mir-551-P2  Cpo-Mir-551-P2  Dno-Mir-551-P2  Dre-Mir-551-P2  Ete-Mir-551-P2  Gga-Mir-551-P2  Gja-Mir-551-P2  Gmo-Mir-551-P2  Hsa-Mir-551-P2  Loc-Mir-551-P2  Mal-Mir-551-P2  Mdo-Mir-551-P2  Mml-Mir-551-P2  Mmu-Mir-551-P2  Mun-Mir-551-P2  Oan-Mir-551-P2  Ocu-Mir-551-P2  Pbv-Mir-551-P2  Rno-Mir-551-P2  Sha-Mir-551-P2  Spt-Mir-551-P2  Sto-Mir-551-P2  Tgu-Mir-551-P2  Xla-Mir-551-P2a  Xla-Mir-551-P2b  Xtr-Mir-551-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126697.1: 2232984-2233044 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUGUACCAGAGAGAGAUCCACAUUGCCCCAGAAAUCAAGGAUGGGUGAGACCUCGUAAUGAACGAUGAAGGCGACCCAUUCUUGGUUUCAGGGACCUUGGUGGCAUAACCAGUUCAGUUCC
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Structure
        10         20         30        40        50        60 
CUGUACCAGAGAGAGAU-    AUUGC-|  A                GAGA   CGUAAUG 
                  CCAC      CCC GAAAUCAAGGAUGGGU    CCU       \
                  GGUG      GGG CUUUGGUUCUUACCCA    GGA       A
CCUUGACUUGACCAAUAC    GUUCCA^  A                GC--   AGUAGCA 
 .       110       100        90        80          70
Deep sequencing
3' NTU Unknown
MotifsNo
Star sequence

Lch-Mir-551-P2_5p* (predicted)

mirBase accessionNone
Sequence
0- GAAAUCAAGGAUGGGUGAGACCU -23
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Mature sequence

Lch-Mir-551-P2_3p (predicted)

mirBase accessionNone
Sequence
40- GCGACCCAUUCUUGGUUUCAG -61
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