| MirGeneDB ID | Cja-Mir-551-P1 |
|---|---|
| Family name | MIR-551 (all species) |
| Seed | CGACCCA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-551-P2 |
| Orthologues | Ami-Mir-551-P1 Cfa-Mir-551-P1 Cli-Mir-551-P1 Cmi-Mir-551-P1 Cpi-Mir-551-P1 Eca-Mir-551-P1 Gja-Mir-551-P1 Hsa-Mir-551-P1 Laf-Mir-551-P1 Lch-Mir-551-P1 Loc-Mir-551-P1 Mdo-Mir-551-P1 Mml-Mir-551-P1 Mmr-Mir-551-P1 Neu-Mir-551-P1 Pab-Mir-551-P1 Pbv-Mir-551-P1 Pma-Mir-551-o1 Sha-Mir-551-P1 Spt-Mir-551-P1 Xla-Mir-551-P1a Xla-Mir-551-P1b Xtr-Mir-551-P1 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021921.1: 38541597-38541654 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GCCACCAAAGGGGACUGUGGGGUGACCCUGGAAAUCCAGAGUGGGUGGGGCCUGUCUGACCCUCUAGGCGACCCACUCUUGGUUUCCAGGGCUGCCCUGGAAGCCACAGAUGGAGAGGGet precursor sequence |
| Structure | 10 20 30 40 50 GCCACCAAAGGGGACUGU--| GA C GGG GUCUG GGGGU CCCUGGAAAUC AGAGUGGGU GCCU A UCCCG GGGACCUUUGG UCUCACCCA CGGA C GGAGAGGUAGACACCGAAGG^ UC U G-- UCUCC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Yes |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Cja-Mir-551-P1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GAAAUCCAGAGUGGGUGGGGCCU -23
Get sequence
|
| Mature sequence | Cja-Mir-551-P1_3p |
| mirBase accession | None |
| Sequence |
37- GCGACCCACUCUUGGUUUCCA -58
Get sequence
|
