Mir-551-P1

MirGeneDB ID

Xtr-Mir-551-P1

Family name

MIR-551 (all species)

Seed

AAACCAA

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

Paralogues

Xtr-Mir-551-P2

Orthologues

Ami-Mir-551-P1 Cfa-Mir-551-P1 Cja-Mir-551-P1 Cli-Mir-551-P1 Cmi-Mir-551-P1 Cpi-Mir-551-P1 Eca-Mir-551-P1 Gja-Mir-551-P1 Hsa-Mir-551-P1 Laf-Mir-551-P1 Lch-Mir-551-P1 Loc-Mir-551-P1 Mdo-Mir-551-P1 Mml-Mir-551-P1 Mmr-Mir-551-P1 Neu-Mir-551-P1 Pab-Mir-551-P1 Pbv-Mir-551-P1 Pma-Mir-551-o1 Sha-Mir-551-P1 Spt-Mir-551-P1 Xla-Mir-551-P1a Xla-Mir-551-P1b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr7: 93453650-93453707 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAAUUUAGAACAAAAGCUUGUUUGACCUUGGAAACCAAGAGUGGGUUGGGCCUGUUAGAUCACAUAGGCGACCCAUACUUGGUUUCAAGGGUUAGCAGGAAUAUCAAAAGCAGGCCUG

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Structure

        10           20        30        40        50         
UAAUUUAGAACAAAAGC---|    U      G         A       GG   UGUUAG 
                    UUGUU GACCUU GAAACCAAG GUGGGUU  GCC      A
                    GACGA UUGGGA CUUUGGUUC UACCCAG  CGG      U
GUCCGGACGAAAACUAUAAG^    -      A         A       --   AUACAC 
      110       100         90        80        70          60

Deep sequencing

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3' NTU

Unknown

Motifs

UGUG in loop

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-551-P1_5p

mirBase accession

None

Sequence

0- GAAACCAAGAGUGGGUUGGGCC -22

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Star sequence

Xtr-Mir-551-P1_3p* (predicted)

mirBase accession

None

Sequence

37- GCGACCCAUACUUGGUUUCAA -58

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